# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.58e-23 c.56.5.6 90921 1xovA 326 1.22e-21 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 2.672 1fnoA 417 3.813 d.58.19.1,c.56.5.4 70145,75841 3pmgA 561 6.108 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1u0tA 307 6.871 e.52.1.1 107567 1yqeA 282 7.774 c.56.7.1 123879 2a5hA 416 10.53 1kfiA 572 11.35 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 3ce9A 354 11.60 2rbkA 261 13.34 1o2dA 371 13.63 e.22.1.2 86591 2pgfA 371 15.43 2a0mA 316 17.43 c.42.1.1 125960 3bijA 285 18.06 1vljA 407 23.14 e.22.1.2 108832 1lt8A 406 24.46 c.1.26.1 78186 1xngA 268 25.02 c.26.2.1 122186 1ig3A 263 25.06 b.82.6.1,c.100.1.1 62358,62359 1ho1A 242 26.94 c.1.24.1 61097 1tezA 474 26.97 a.99.1.1,c.28.1.1 112409,112410 1wqaA 455 27.81 1edgA 380 27.93 c.1.8.3 28807 1vajA 214 29.19 d.309.1.1 119907 1tq8A 163 30.49 c.26.2.4 107204 1k20A 310 30.53 c.107.1.1 68027 1vixA 420 30.79 c.56.5.4,d.58.19.1 100777,100778 2aeeA 211 31.99 c.61.1.1 126620 1rpxA 230 32.13 c.1.2.2 28536 1sr4B 261 34.15 d.151.1.1 105949 1fs1B 141 34.90 a.157.1.1,d.42.1.1 19252,38664 2e18A 257 34.99 2ywxA 157 36.01 2rb7A 364 37.27 1yw4A 341 38.07 c.56.5.7 124131 2fiuA 99 38.31 d.58.4.16 133537 1euaA 213 38.54 c.1.10.1 29155 1odzA 386 38.74 c.1.8.3 86889 2qt3A 403 38.96 1b9dA 163 39.01 c.55.3.2 33649 2arkA 188 39.20 c.23.5.8 127202 3cu2A 237 39.75 2nxfA 322 40.24 1iow 306 41.23 2o3aA 178 41.23 1gsjA 258 41.76 c.73.1.2 70397 1jq5A 370 42.70 e.22.1.2 67084 2dy0A 190 42.85 2jgnA 185 45.14 2q3bA 313 46.88 1rrmA 386 47.02 e.22.1.2 105081 1f5sA 211 48.78 c.108.1.4 59656 2dumA 170 49.51 1ka9H 200 49.54 c.23.16.1 77308 1uaaA 673 50.43 c.37.1.19,c.37.1.19 32401,32402 1cg2A 393 52.03 c.56.5.4,d.58.19.1 33844,39360 2anpA 291 52.97 c.56.5.4 127056 3bghA 236 53.16 2jrnA 163 53.65 1o1xA 155 54.71 c.121.1.1 86553 2p41A 305 54.88 2ywuA 181 55.34 2h3hA 313 55.61 1dnpA 471 56.24 a.99.1.1,c.28.1.1 18775,31630 2ywjA 186 58.13 1eyrA 228 58.96 c.68.1.13 34514 1wjgA 137 60.70 c.26.2.4 114696 2f7lA 455 60.95 2z0hA 197 61.04 2pfsA 150 61.38 1wbhA 214 62.00 c.1.10.1 120845 2pbrA 195 64.28 2hqsC 118 65.50 d.79.7.1 136666 1i6wA 181 65.65 c.69.1.18 61859 1ei6A 406 67.12 c.76.1.4 90443 1geeA 261 68.85 c.2.1.2 90509 1ydnA 295 69.24 1twdA 256 69.89 c.1.30.1 107397 1kuuA 202 70.25 d.153.2.1 73019 2v9dA 343 72.89 1bn6A 294 73.91 c.69.1.8 34678 1chmA 401 75.37 c.55.2.1,d.127.1.1 33545,41142 1dhpA 292 78.04 c.1.10.1 29097 2tpsA 227 78.98 c.1.3.1 28591 1atiA 505 79.60 c.51.1.1,d.104.1.1 33196,40745 1evlA 401 80.44 c.51.1.1,d.104.1.1 33202,40751 1nmsA 249 81.59 c.17.1.1 85879 3b9pA 297 83.00 1vhoA 346 83.13 b.49.3.1,c.56.5.4 100694,100695 3cdxA 354 83.40 1qb7A 236 83.42 c.61.1.1 34087 1r1mA 164 84.17 d.79.7.1 96820 2fuvA 549 86.06 1duvG 333 88.37 c.78.1.1,c.78.1.1 35228,35229 1kjnA 157 89.01 c.115.1.1 72614 1usgA 346 89.60 c.93.1.1 99864 1nf2A 268 89.65 c.108.1.10 91849