# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.58e-22 c.56.5.6 90921 1xovA 326 7.08e-21 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 2.336 1fnoA 417 5.181 d.58.19.1,c.56.5.4 70145,75841 1yqeA 282 6.820 c.56.7.1 123879 3pmgA 561 8.397 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2a5hA 416 8.496 3ce9A 354 10.04 2a0mA 316 11.79 c.42.1.1 125960 1o2dA 371 12.54 e.22.1.2 86591 1kfiA 572 12.96 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1edgA 380 13.42 c.1.8.3 28807 1u0tA 307 13.81 e.52.1.1 107567 3bijA 285 14.32 1vljA 407 17.42 e.22.1.2 108832 2rbkA 261 17.78 1lt8A 406 19.87 c.1.26.1 78186 1wqaA 455 21.08 1ho1A 242 21.96 c.1.24.1 61097 2pgfA 371 22.73 1tezA 474 23.29 a.99.1.1,c.28.1.1 112409,112410 1tq8A 163 26.19 c.26.2.4 107204 1sr4B 261 26.33 d.151.1.1 105949 2ywxA 157 26.84 1rpxA 230 26.87 c.1.2.2 28536 1k20A 310 27.04 c.107.1.1 68027 1jq5A 370 28.80 e.22.1.2 67084 1euaA 213 28.88 c.1.10.1 29155 1xngA 268 29.85 c.26.2.1 122186 2dy0A 190 30.23 1fs1B 141 32.12 a.157.1.1,d.42.1.1 19252,38664 2o3aA 178 33.47 1f5sA 211 34.37 c.108.1.4 59656 2rb7A 364 35.65 2e18A 257 35.69 2nxfA 322 36.26 1wbhA 214 36.92 c.1.10.1 120845 2aeeA 211 36.97 c.61.1.1 126620 1vixA 420 38.53 c.56.5.4,d.58.19.1 100777,100778 1iow 306 39.21 1odzA 386 39.47 c.1.8.3 86889 2anpA 291 40.06 c.56.5.4 127056 3cu2A 237 40.21 2qt3A 403 40.97 2dumA 170 41.46 1yw4A 341 42.47 c.56.5.7 124131 2f7lA 455 44.01 1rrmA 386 44.58 e.22.1.2 105081 2arkA 188 46.14 c.23.5.8 127202 1ig3A 263 48.64 b.82.6.1,c.100.1.1 62358,62359 2jgnA 185 49.41 1o1xA 155 49.48 c.121.1.1 86553 2q3bA 313 50.12 1cg2A 393 50.31 c.56.5.4,d.58.19.1 33844,39360 1dnpA 471 51.30 a.99.1.1,c.28.1.1 18775,31630 1oj7A 408 51.47 e.22.1.2 103971 1qb7A 236 54.26 c.61.1.1 34087 1gsjA 258 54.45 c.73.1.2 70397 1ka9H 200 54.51 c.23.16.1 77308 2p41A 305 54.91 3bghA 236 55.21 1i6wA 181 55.23 c.69.1.18 61859 1kbjA 412 55.70 c.1.4.1 72280 1wjgA 137 57.00 c.26.2.4 114696 2pbrA 195 57.03 2hqsC 118 57.98 d.79.7.1 136666 1b9dA 163 58.46 c.55.3.2 33649 1ydnA 295 60.54 1nmsA 249 60.86 c.17.1.1 85879 2pfsA 150 61.33 2ywjA 186 61.89 1ei6A 406 62.59 c.76.1.4 90443 2z0hA 197 62.83 2v9dA 343 63.06 2fiuA 99 63.44 d.58.4.16 133537 1vhoA 346 64.12 b.49.3.1,c.56.5.4 100694,100695 1vajA 214 65.80 d.309.1.1 119907 2aebA 322 69.61 c.42.1.1 126617 3cdxA 354 71.42 1rcuA 195 72.34 c.129.1.1 97295 2fuvA 549 73.52 1geeA 261 75.45 c.2.1.2 90509 1bn6A 294 75.68 c.69.1.8 34678 1eyrA 228 76.40 c.68.1.13 34514 2ywuA 181 76.85 1r1mA 164 77.30 d.79.7.1 96820 1qnf 484 78.95 2afwA 329 79.94 c.56.5.8 126707 1twdA 256 80.01 c.1.30.1 107397 1atiA 505 82.46 c.51.1.1,d.104.1.1 33196,40745 1zjrA 211 82.80 1y13A 181 83.68 d.96.1.2 116319 2tpsA 227 84.93 c.1.3.1 28591 1dhpA 292 85.82 c.1.10.1 29097 1qtrA 317 86.54 c.69.1.7 34660 2q1sA 377 86.77 1uaaA 673 87.68 c.37.1.19,c.37.1.19 32401,32402 1wpuA 147 88.77 d.275.1.1 121151 1y76A 62 88.94 a.194.1.1 122683 1usgA 346 89.11 c.93.1.1 99864 1kjnA 157 89.80 c.115.1.1 72614