# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 9.04e-24 c.56.5.6 90921 1xovA 326 5.29e-22 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 2.689 1fnoA 417 4.503 d.58.19.1,c.56.5.4 70145,75841 1yqeA 282 4.693 c.56.7.1 123879 2a5hA 416 7.152 3ce9A 354 8.187 1o2dA 371 9.945 e.22.1.2 86591 3pmgA 561 12.58 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1u0tA 307 12.71 e.52.1.1 107567 1edgA 380 12.80 c.1.8.3 28807 3bijA 285 13.20 1lt8A 406 13.77 c.1.26.1 78186 1kfiA 572 15.97 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 2rbkA 261 16.82 2a0mA 316 16.92 c.42.1.1 125960 2aeeA 211 17.09 c.61.1.1 126620 1xngA 268 18.27 c.26.2.1 122186 1sr4B 261 18.39 d.151.1.1 105949 2pgfA 371 21.12 1tq8A 163 21.21 c.26.2.4 107204 1ho1A 242 21.33 c.1.24.1 61097 1vljA 407 21.39 e.22.1.2 108832 1tezA 474 22.67 a.99.1.1,c.28.1.1 112409,112410 2dy0A 190 23.07 1wqaA 455 23.32 1yw4A 341 25.06 c.56.5.7 124131 2nxfA 322 26.45 1odzA 386 28.17 c.1.8.3 86889 1jq5A 370 29.40 e.22.1.2 67084 2o3aA 178 29.96 2rb7A 364 30.77 2ywxA 157 31.55 1k20A 310 31.90 c.107.1.1 68027 2anpA 291 32.44 c.56.5.4 127056 1rpxA 230 33.27 c.1.2.2 28536 2arkA 188 34.35 c.23.5.8 127202 1euaA 213 34.71 c.1.10.1 29155 3cu2A 237 35.14 2f7lA 455 35.25 1b9dA 163 36.15 c.55.3.2 33649 1vhoA 346 36.41 b.49.3.1,c.56.5.4 100694,100695 1fs1B 141 37.10 a.157.1.1,d.42.1.1 19252,38664 2pfsA 150 37.13 1o1xA 155 37.53 c.121.1.1 86553 1vixA 420 38.36 c.56.5.4,d.58.19.1 100777,100778 2q3bA 313 38.46 1f5sA 211 38.46 c.108.1.4 59656 1wbhA 214 38.61 c.1.10.1 120845 2z0hA 197 39.47 2qt3A 403 39.98 1rrmA 386 40.02 e.22.1.2 105081 2e18A 257 40.17 1cg2A 393 42.41 c.56.5.4,d.58.19.1 33844,39360 1iow 306 44.34 1wjgA 137 44.45 c.26.2.4 114696 2ywuA 181 45.39 2pbrA 195 45.94 2h3hA 313 46.05 2fiuA 99 47.10 d.58.4.16 133537 2p41A 305 48.29 1i6wA 181 50.19 c.69.1.18 61859 2dumA 170 50.91 1kuuA 202 51.46 d.153.2.1 73019 1r1mA 164 54.62 d.79.7.1 96820 1qb7A 236 56.99 c.61.1.1 34087 2jgnA 185 57.44 1bn6A 294 57.89 c.69.1.8 34678 1eyrA 228 60.49 c.68.1.13 34514 1oj7A 408 60.98 e.22.1.2 103971 2hqsC 118 62.04 d.79.7.1 136666 1geeA 261 62.36 c.2.1.2 90509 2tpsA 227 64.23 c.1.3.1 28591 1qumA 285 64.26 c.1.15.1 29393 1j97A 211 64.70 c.108.1.4 62753 1dnpA 471 65.89 a.99.1.1,c.28.1.1 18775,31630 1ei6A 406 66.87 c.76.1.4 90443 1ig3A 263 67.56 b.82.6.1,c.100.1.1 62358,62359 3bghA 236 67.95 1h7eA 245 68.34 c.68.1.13 60717 1ka9H 200 69.25 c.23.16.1 77308 1ydnA 295 69.63 1gsjA 258 70.22 c.73.1.2 70397 2afwA 329 71.97 c.56.5.8 126707 1eziA 228 73.89 c.68.1.13 34512 2gebA 185 74.95 2v9dA 343 75.76 1kbjA 412 77.35 c.1.4.1 72280 2ywjA 186 77.66 1y0bA 197 78.02 c.61.1.1 122476 1zjrA 211 78.62 1uaaA 673 78.92 c.37.1.19,c.37.1.19 32401,32402 1vajA 214 79.32 d.309.1.1 119907 3cdxA 354 82.90 1duvG 333 84.26 c.78.1.1,c.78.1.1 35228,35229 1kjnA 157 85.82 c.115.1.1 72614 1y76A 62 86.57 a.194.1.1 122683 1nvmA 345 86.87 a.5.7.1,c.1.10.5 86249,86250 2dtrA 226 87.04 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1wpuA 147 87.81 d.275.1.1 121151 2fuvA 549 89.18 1n2eA 300 89.25 c.26.1.4 85268