# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.39e-27 c.56.5.6 90921 1xovA 326 2.26e-25 b.34.11.4,c.56.5.6 122206,122207 1fnoA 417 0.2048 d.58.19.1,c.56.5.4 70145,75841 1vixA 420 1.486 c.56.5.4,d.58.19.1 100777,100778 3ce9A 354 2.493 2nxfA 322 3.184 1nmsA 249 4.608 c.17.1.1 85879 2anpA 291 4.627 c.56.5.4 127056 1h7eA 245 5.185 c.68.1.13 60717 2p41A 305 6.674 1vhoA 346 6.858 b.49.3.1,c.56.5.4 100694,100695 2q1sA 377 6.867 2arkA 188 8.634 c.23.5.8 127202 2ywxA 157 9.520 3bijA 285 9.770 1ta9A 450 10.88 1jq5A 370 11.37 e.22.1.2 67084 2rbkA 261 11.65 1rrmA 386 12.40 e.22.1.2 105081 1fs1B 141 13.97 a.157.1.1,d.42.1.1 19252,38664 1lxnA 99 14.02 d.58.48.1 84737 2epiA 100 14.44 1sr4B 261 15.34 d.151.1.1 105949 2oczA 231 16.43 1u0tA 307 16.76 e.52.1.1 107567 1amp 291 17.10 1o2dA 371 19.14 e.22.1.2 86591 1vecA 206 22.72 c.37.1.19 100575 2pbrA 195 22.86 1bvwA 360 22.99 c.6.1.1 30668 1tq8A 163 23.22 c.26.2.4 107204 1yqhA 109 23.79 d.58.48.1 123886 2f62A 161 23.98 c.23.14.1 133021 1qcxA 359 25.70 b.80.1.2 28028 1odzA 386 26.47 c.1.8.3 86889 1vljA 407 26.64 e.22.1.2 108832 2fp3A 316 27.06 2ef5A 290 27.92 1qjwA 365 28.60 c.6.1.1 30657 1ka9H 200 28.96 c.23.16.1 77308 1lt8A 406 29.57 c.1.26.1 78186 1b9dA 163 32.09 c.55.3.2 33649 1xngA 268 33.98 c.26.2.1 122186 2z0hA 197 34.96 1oneA 436 35.93 c.1.11.1,d.54.1.1 29200,38844 2v9dA 343 36.54 1zsyA 357 36.55 2bvwA 362 37.60 c.6.1.1 30666 1cg2A 393 38.28 c.56.5.4,d.58.19.1 33844,39360 1k2yX 463 38.37 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1edgA 380 41.33 c.1.8.3 28807 1p5dX 463 43.93 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1o1xA 155 46.05 c.121.1.1 86553 1smlA 269 47.43 d.157.1.1 42053 1yqeA 282 47.82 c.56.7.1 123879 2jmpA 107 48.19 1psdA 409 50.71 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 4enl 436 51.92 2rb7A 364 52.82 2cw8A 537 53.16 2ywjA 186 55.43 1xmpA 170 55.48 c.23.8.1 115521 1xfoA 357 56.05 b.49.3.1,c.56.5.4 115265,115266 1y2qA 143 56.48 1itg 166 56.82 2q3vA 130 57.93 d.68.6.2 139811 1qq9A 284 57.96 c.56.5.4 33841 1vajA 214 59.42 d.309.1.1 119907 1m7gA 211 60.79 c.37.1.4 78724 2fcrA 173 61.56 c.23.5.1 31151 1ysjA 404 61.92 c.56.5.4,d.58.19.1 123975,123976 1lxjA 104 62.13 d.58.48.1 84736 2p12A 176 64.41 1opr 213 65.38 2r8wA 332 65.65 1ccwA 137 68.74 c.23.6.1 31238 1cmiA 85 69.11 d.39.1.1 38551 2fb9A 322 69.25 2ar9A 278 69.28 1vkrA 125 70.82 c.44.2.1 108689 2j3mA 572 72.67 1eo0A 77 72.75 a.48.3.1 17790 1j58A 385 73.23 b.82.1.2 71531 2hl0A 143 73.86 2csgA 424 74.59 b.82.2.12 130768 1oxkB 134 74.85 c.23.1.1 93691 4tmkA 213 77.80 c.37.1.1 31930 2pe3A 354 80.27 1iow 306 82.56 1vk8A 106 84.44 d.58.48.1 108636 2hq7A 146 84.82 b.45.1.1 136657 1u11A 182 86.67 c.23.8.1 107576 1rpxA 230 87.10 c.1.2.2 28536 1rz3A 201 88.19 c.37.1.6 98132 1u8tA 129 88.66 c.23.1.1 113192 1a7tA 232 89.94 d.157.1.1 42041