# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jwqA	179	1.09e-25	c.56.5.6	90921
1xovA	326	1.30e-23	b.34.11.4,c.56.5.6	122206,122207
2fb2A	340	1.135		
1fnoA	417	6.359	d.58.19.1,c.56.5.4	70145,75841
2a0mA	316	7.006	c.42.1.1	125960
2nxfA	322	7.295		
3pmgA	561	8.646	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
2a5hA	416	8.841		
1jq5A	370	10.64	e.22.1.2	67084
3ce9A	354	11.35		
2rbkA	261	11.85		
1yqeA	282	12.66	c.56.7.1	123879
3bijA	285	13.97		
1rpxA	230	14.22	c.1.2.2	28536
1ig3A	263	15.87	b.82.6.1,c.100.1.1	62358,62359
1u0tA	307	16.55	e.52.1.1	107567
1xngA	268	17.23	c.26.2.1	122186
1b9dA	163	17.98	c.55.3.2	33649
2pgfA	371	18.97		
1euaA	213	19.97	c.1.10.1	29155
1o2dA	371	23.43	e.22.1.2	86591
2ywuA	181	23.68		
1wqaA	455	24.22		
3cu2A	237	24.63		
1ka9H	200	24.86	c.23.16.1	77308
1k20A	310	25.09	c.107.1.1	68027
1ho1A	242	25.64	c.1.24.1	61097
2o3aA	178	26.17		
1kfiA	572	27.62	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68555,68556,68557,68558
1vixA	420	28.44	c.56.5.4,d.58.19.1	100777,100778
1vljA	407	29.31	e.22.1.2	108832
2e18A	257	30.30		
1fs1B	141	32.30	a.157.1.1,d.42.1.1	19252,38664
2tpsA	227	32.40	c.1.3.1	28591
1tq8A	163	34.61	c.26.2.4	107204
1nmsA	249	36.57	c.17.1.1	85879
2fs2A	151	36.58	d.38.1.5	134003
1dnpA	471	37.00	a.99.1.1,c.28.1.1	18775,31630
1p5dX	463	37.22	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
1lt8A	406	38.30	c.1.26.1	78186
2pbrA	195	39.58		
2pfsA	150	39.71		
2ywxA	157	40.94		
1oj7A	408	41.21	e.22.1.2	103971
1x31B	404	41.23		
2fiuA	99	41.84	d.58.4.16	133537
1tezA	474	42.09	a.99.1.1,c.28.1.1	112409,112410
1iow	306	43.34		
2ie2A	222	45.57		
2dy0A	190	46.55		
1rrmA	386	47.10	e.22.1.2	105081
1wbhA	214	47.25	c.1.10.1	120845
1tuoA	464	48.33		
1y0bA	197	49.28	c.61.1.1	122476
2aeeA	211	50.17	c.61.1.1	126620
1atiA	505	50.94	c.51.1.1,d.104.1.1	33196,40745
2p4mA	219	52.27		
1zjrA	211	52.32		
1fkx	349	53.16		
1j97A	211	53.28	c.108.1.4	62753
2z0hA	197	54.47		
1f5sA	211	56.27	c.108.1.4	59656
1kjnA	157	57.13	c.115.1.1	72614
2zgwA	235	57.87		
1chmA	401	61.67	c.55.2.1,d.127.1.1	33545,41142
2arkA	188	61.73	c.23.5.8	127202
2v9dA	343	63.13		
2p41A	305	64.06		
1o1xA	155	64.41	c.121.1.1	86553
2q3bA	313	64.99		
1g5hA	454	65.45	c.51.1.1,d.104.1.1	60270,60271
1p3wA	404	65.72	c.67.1.3	87752
1pnoA	180	68.55	c.31.1.4	94953
1usgA	346	69.01	c.93.1.1	99864
1bn6A	294	69.65	c.69.1.8	34678
1wehA	171	69.85	c.129.1.1	114551
2dumA	170	70.67		
1qb7A	236	73.48	c.61.1.1	34087
1itg	166	74.77		
1vkrA	125	74.95	c.44.2.1	108689
1kbjA	412	75.02	c.1.4.1	72280
1eyrA	228	75.22	c.68.1.13	34514
1wjgA	137	79.35	c.26.2.4	114696
2b8eA	273	80.63	c.108.1.7,d.220.1.1	128068,128069
1js3A	486	80.66	c.67.1.6	67215
1dcqA	278	80.95	d.211.1.1,g.45.1.1	19178,45326
1gsjA	258	81.02	c.73.1.2	70397
1vkfA	188	81.34	c.1.29.1	108656
2gagB	405	81.54		
1edgA	380	82.41	c.1.8.3	28807
1mjhA	162	82.71	c.26.2.4	31639
2qt3A	403	83.44		
2ywjA	186	83.84		
3cdxA	354	84.52		
1l7yA	94	84.63	d.15.1.6	73676
2f7lA	455	84.77		
1g67A	225	85.30	c.1.3.1	60311
1vajA	214	86.11	d.309.1.1	119907
1ydnA	295	87.09		
1y76A	62	89.38	a.194.1.1	122683