# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 9.75e-22 c.56.5.6 90921 1xovA 326 3.37e-20 b.34.11.4,c.56.5.6 122206,122207 2pgfA 371 0.3145 3bijA 285 0.8563 1gw1A 376 1.705 c.1.8.3 76361 2a5hA 416 2.818 1eg5A 384 2.986 c.67.1.3 34429 2bmbA 545 3.691 1wqaA 455 4.058 1hjsA 332 6.073 c.1.8.3 83492 2aeeA 211 6.395 c.61.1.1 126620 2aebA 322 7.312 c.42.1.1 126617 1fwcC 567 7.506 b.92.1.1,c.1.9.2 28410,29032 1fkx 349 7.665 1vhoA 346 8.449 b.49.3.1,c.56.5.4 100694,100695 1fobA 334 9.463 c.1.8.3 83255 1ecxA 384 9.673 c.67.1.3 34431 3coxA 507 9.768 c.3.1.2,d.16.1.1 30332,37863 2cw6A 298 10.84 1yqeA 282 10.90 c.56.7.1 123879 1k20A 310 11.64 c.107.1.1 68027 1a5mC 566 12.42 b.92.1.1,c.1.9.2 28423,29045 2q4aA 330 12.99 b.82.2.8 139839 2okjA 504 13.02 1rm6A 769 13.53 d.41.1.1,d.133.1.1 111872,111873 1euaA 213 14.52 c.1.10.1 29155 1l6rA 227 14.56 c.108.1.10 77768 1dcqA 278 15.37 d.211.1.1,g.45.1.1 19178,45326 1xngA 268 15.87 c.26.2.1 122186 1xc1A 309 16.28 c.94.1.1 109543 2dr1A 386 18.56 2tpsA 227 18.61 c.1.3.1 28591 2cevA 299 18.81 c.42.1.1 32576 1cb7B 483 20.99 c.1.19.2 29648 1oj7A 408 21.00 e.22.1.2 103971 1rlmA 271 23.38 c.108.1.10 111860 2q4zA 312 24.01 1p5dX 463 24.46 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1t5oA 351 27.57 c.124.1.5 106459 1oywA 523 28.08 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1d3vA 323 28.48 c.42.1.1 32559 1l1qA 186 28.71 c.61.1.1 77653 1sc6A 404 28.75 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qwkA 317 30.03 c.1.7.1 96482 1cx8B 639 30.76 a.48.2.1,c.8.4.1,c.56.5.5 17783,30764,33852 2dc1A 236 31.28 1w2wB 191 31.63 1jq5A 370 34.07 e.22.1.2 67084 1rcuA 195 34.34 c.129.1.1 97295 2c0hA 353 35.39 c.1.8.3 129594 2qn0A 430 36.00 2fb2A 340 36.27 2dy0A 190 37.82 1wr8A 231 38.09 c.108.1.10 114836 2nx9A 464 38.15 1h7xA 1025 39.12 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2v1xA 591 40.23 2basA 431 40.98 c.1.33.1,d.110.6.2 128244,128245 1ivnA 190 41.13 c.23.10.5 83719 1fnoA 417 41.69 d.58.19.1,c.56.5.4 70145,75841 1o7tA 309 42.02 c.94.1.1 86645 1eq2A 310 42.28 c.2.1.2 29814 1o2dA 371 43.03 e.22.1.2 86591 2admA 421 43.98 c.66.1.27,d.287.1.1 111611,111612 2gl5A 410 44.11 c.1.11.2,d.54.1.1 135336,135337 2dumA 170 45.18 1qv9A 283 45.71 c.127.1.1 96356 1yp2A 451 46.07 b.81.1.4,c.68.1.6 123798,123799 1twdA 256 47.51 c.1.30.1 107397 4ubpC 570 47.52 b.92.1.1,c.1.9.2 28431,29053 1ejrC 567 47.62 b.92.1.1,c.1.9.2 28420,29042 1n2eA 300 48.16 c.26.1.4 85268 1rpxA 230 49.99 c.1.2.2 28536 1ni4A 365 50.26 c.36.1.11 85728 2o2iA 300 50.49 2qvbA 297 51.88 2gu2A 312 52.69 1yloA 348 54.58 b.49.3.1,c.56.5.4 123659,123660 1qapA 296 58.85 c.1.17.1,d.41.2.1 29559,38595 1hnjA 317 59.07 c.95.1.2,c.95.1.2 35969,35970 1jeqB 565 62.19 b.131.1.2,c.62.1.4 90368,90369 1b9dA 163 63.45 c.55.3.2 33649 1ka9H 200 64.37 c.23.16.1 77308 1fs1B 141 64.67 a.157.1.1,d.42.1.1 19252,38664 2gagB 405 65.64 1x31B 404 67.59 2ggsA 273 68.44 1c3oA 1073 68.64 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18562,31491,31681,31682,41526,41527 1kqpA 271 68.88 c.26.2.1 72883 2i9iA 254 68.96 3cu2A 237 69.31 1b63A 333 69.54 d.14.1.3,d.122.1.2 37566,41107 1heiA 451 70.10 c.37.1.14,c.37.1.14 32463,32464 1tv8A 340 70.21 c.1.28.3 107352 2puzA 419 70.33 2olnA 397 71.18 2o1sA 621 71.46 1gteA 1025 71.75 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2ajtA 500 72.00 b.43.2.2,c.85.1.2 126894,126895 2hs8A 402 72.61 1nvmA 345 73.57 a.5.7.1,c.1.10.5 86249,86250 2r98A 456 75.24 1ijhA 504 75.44 c.3.1.2,d.16.1.1 66161,66162 1ihoA 283 76.31 c.26.1.4 62390 1duvG 333 77.32 c.78.1.1,c.78.1.1 35228,35229 1zu0A 529 77.56 2csgA 424 77.93 b.82.2.12 130768 2q4oA 215 77.98 c.129.1.1 139872 1rloA 271 78.55 c.108.1.10 111864 1j0hA 588 78.65 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1nmsA 249 79.01 c.17.1.1 85879 3bghA 236 79.68 1jqoA 970 79.87 c.1.12.3 77160 1li5A 461 80.04 a.27.1.1,c.26.1.1 73912,73913 1odfA 290 81.16 c.37.1.6 92782 2qtcA 886 81.39 2b4yA 271 82.96 c.31.1.5 127868 3pmgA 561 83.52 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1jdc 429 85.89 1xr4A 509 86.01 c.124.1.2,c.124.1.2 115860,115861 1f5sA 211 86.24 c.108.1.4 59656 2pq6A 482 87.07 1gph1 465 87.48 2bwvA 440 88.26 c.55.2.1,d.127.1.1 129387,129388 2qm8A 337 88.44 2ie2A 222 89.50