# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 8.82e-26 c.56.5.6 90921 1xovA 326 1.11e-23 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 1.225 2a0mA 316 5.359 c.42.1.1 125960 2a5hA 416 6.696 3ce9A 354 8.156 2pgfA 371 8.341 1yqeA 282 8.922 c.56.7.1 123879 3pmgA 561 9.830 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2nxfA 322 11.64 1lt8A 406 12.02 c.1.26.1 78186 1euaA 213 13.41 c.1.10.1 29155 1fnoA 417 13.97 d.58.19.1,c.56.5.4 70145,75841 2rbkA 261 14.12 1xngA 268 17.48 c.26.2.1 122186 1jq5A 370 17.57 e.22.1.2 67084 1ka9H 200 19.40 c.23.16.1 77308 1k20A 310 20.14 c.107.1.1 68027 2ywuA 181 20.24 1rpxA 230 21.21 c.1.2.2 28536 3bijA 285 22.14 1u0tA 307 23.67 e.52.1.1 107567 1o2dA 371 24.41 e.22.1.2 86591 1b9dA 163 24.88 c.55.3.2 33649 2o3aA 178 24.91 2tpsA 227 26.85 c.1.3.1 28591 1kfiA 572 27.40 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 3cu2A 237 27.49 1wbhA 214 27.61 c.1.10.1 120845 2fiuA 99 27.92 d.58.4.16 133537 1p5dX 463 31.67 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nmsA 249 31.73 c.17.1.1 85879 1oj7A 408 35.69 e.22.1.2 103971 1vljA 407 35.71 e.22.1.2 108832 2p41A 305 37.47 1tezA 474 37.60 a.99.1.1,c.28.1.1 112409,112410 2aeeA 211 38.10 c.61.1.1 126620 1chmA 401 39.15 c.55.2.1,d.127.1.1 33545,41142 1fs1B 141 40.17 a.157.1.1,d.42.1.1 19252,38664 1fkx 349 40.77 2pfsA 150 41.66 1rrmA 386 43.54 e.22.1.2 105081 1wqaA 455 43.67 1tq8A 163 45.37 c.26.2.4 107204 2ywxA 157 47.13 2e18A 257 49.43 1vixA 420 52.22 c.56.5.4,d.58.19.1 100777,100778 2q3bA 313 52.51 2ie2A 222 52.70 1yw4A 341 52.91 c.56.5.7 124131 1ig3A 263 53.25 b.82.6.1,c.100.1.1 62358,62359 1wehA 171 53.69 c.129.1.1 114551 2fs2A 151 54.00 d.38.1.5 134003 2pbrA 195 54.78 1dnpA 471 54.86 a.99.1.1,c.28.1.1 18775,31630 1ho1A 242 55.22 c.1.24.1 61097 2z0hA 197 55.23 1zjrA 211 57.31 1iow 306 57.52 1p3wA 404 57.54 c.67.1.3 87752 2gebA 185 57.55 2dy0A 190 57.90 2arkA 188 59.86 c.23.5.8 127202 2g6yA 217 60.72 3cdxA 354 63.11 1bn6A 294 63.72 c.69.1.8 34678 1vkfA 188 64.23 c.1.29.1 108656 1atiA 505 64.82 c.51.1.1,d.104.1.1 33196,40745 2p4mA 219 65.11 1kjnA 157 66.07 c.115.1.1 72614 2ywjA 186 66.26 2dumA 170 66.28 1j97A 211 67.84 c.108.1.4 62753 2biiA 424 69.33 1n2eA 300 72.53 c.26.1.4 85268 1f5sA 211 74.32 c.108.1.4 59656 1usgA 346 74.51 c.93.1.1 99864 2qt3A 403 75.62 2v9dA 343 75.92 1vkrA 125 76.17 c.44.2.1 108689 1l6rA 227 76.21 c.108.1.10 77768 1edgA 380 76.50 c.1.8.3 28807 1zsyA 357 76.85 1x31B 404 79.30 2f7lA 455 81.42 1sr4B 261 81.61 d.151.1.1 105949 1ra0A 430 81.82 b.92.1.2,c.1.9.5 111756,111757 2h3hA 313 81.86 1o1xA 155 81.89 c.121.1.1 86553 1qb7A 236 82.36 c.61.1.1 34087 1y0bA 197 85.72 c.61.1.1 122476 1y76A 62 86.55 a.194.1.1 122683 1kbjA 412 87.25 c.1.4.1 72280 2g4rA 160 88.37 1i6wA 181 88.70 c.69.1.18 61859