# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jwqA	179	5.01e-27	c.56.5.6	90921
1xovA	326	6.73e-25	b.34.11.4,c.56.5.6	122206,122207
2fb2A	340	2.140		
2a5hA	416	3.945		
1fnoA	417	8.061	d.58.19.1,c.56.5.4	70145,75841
3ce9A	354	8.655		
2pgfA	371	12.05		
1yqeA	282	14.04	c.56.7.1	123879
1fs1B	141	14.87	a.157.1.1,d.42.1.1	19252,38664
1k20A	310	15.99	c.107.1.1	68027
1u0tA	307	16.75	e.52.1.1	107567
1o2dA	371	17.88	e.22.1.2	86591
1x31B	404	19.91		
1vljA	407	20.06	e.22.1.2	108832
2a0mA	316	20.48	c.42.1.1	125960
3bijA	285	24.05		
1euaA	213	24.60	c.1.10.1	29155
2hqsC	118	24.64	d.79.7.1	136666
2qt3A	403	25.53		
1rrmA	386	25.72	e.22.1.2	105081
1yw4A	341	26.05	c.56.5.7	124131
3pmgA	561	28.05	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	35408,35409,35410,41301
2o3aA	178	28.13		
1vajA	214	28.19	d.309.1.1	119907
2nxfA	322	28.84		
1jq5A	370	29.73	e.22.1.2	67084
2h3hA	313	32.74		
2ywxA	157	32.97		
2fiuA	99	34.20	d.58.4.16	133537
1rpxA	230	34.92	c.1.2.2	28536
2jmpA	107	37.95		
1ig3A	263	38.64	b.82.6.1,c.100.1.1	62358,62359
2p41A	305	38.73		
1nmsA	249	38.75	c.17.1.1	85879
1gsjA	258	39.16	c.73.1.2	70397
2jrnA	163	39.44		
1vixA	420	43.16	c.56.5.4,d.58.19.1	100777,100778
1ka9H	200	43.39	c.23.16.1	77308
3cu2A	237	44.26		
2dumA	170	46.52		
2rbkA	261	46.62		
2tpsA	227	46.98	c.1.3.1	28591
1lt8A	406	48.53	c.1.26.1	78186
2gagB	405	52.79		
2e18A	257	55.32		
1vhoA	346	55.42	b.49.3.1,c.56.5.4	100694,100695
1i6wA	181	55.70	c.69.1.18	61859
1fsgA	233	55.71	c.61.1.1	34029
1kfiA	572	55.74	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68555,68556,68557,68558
1p9oA	313	57.20	c.72.3.1	94397
2q3bA	313	57.23		
2arkA	188	58.06	c.23.5.8	127202
1oj7A	408	58.33	e.22.1.2	103971
1wbhA	214	64.81	c.1.10.1	120845
1dqsA	393	64.97	e.22.1.1	43347
2ywuA	181	66.03		
2dr1A	386	67.71		
2v9dA	343	67.96		
1qb7A	236	68.27	c.61.1.1	34087
1chmA	401	72.98	c.55.2.1,d.127.1.1	33545,41142
1xngA	268	73.06	c.26.2.1	122186
1edgA	380	73.49	c.1.8.3	28807
2p4mA	219	74.31		
1pea	385	76.06		
2g6yA	217	76.70		
1vkrA	125	78.41	c.44.2.1	108689
1y13A	181	83.55	d.96.1.2	116319
1tezA	474	84.12	a.99.1.1,c.28.1.1	112409,112410
3bhdA	234	84.58		
2biiA	424	84.68		
1qcxA	359	85.24	b.80.1.2	28028
1wqaA	455	85.74		
1kuuA	202	89.26	d.153.2.1	73019