# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 6.74e-27 c.56.5.6 90921 1xovA 326 1.23e-24 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 3.693 2pgfA 371 6.809 1rpxA 230 8.540 c.1.2.2 28536 3ce9A 354 9.360 1fs1B 141 10.33 a.157.1.1,d.42.1.1 19252,38664 1fnoA 417 10.64 d.58.19.1,c.56.5.4 70145,75841 1rrmA 386 11.04 e.22.1.2 105081 2a5hA 416 12.38 2o3aA 178 12.68 1u0tA 307 13.76 e.52.1.1 107567 2rbkA 261 13.99 3pmgA 561 14.63 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2nxfA 322 14.85 3bijA 285 15.10 1euaA 213 15.10 c.1.10.1 29155 2ywuA 181 17.19 1o2dA 371 19.20 e.22.1.2 86591 1jq5A 370 19.91 e.22.1.2 67084 2a0mA 316 20.48 c.42.1.1 125960 1xngA 268 20.97 c.26.2.1 122186 2qt3A 403 21.04 2dumA 170 22.54 2fiuA 99 23.39 d.58.4.16 133537 1vljA 407 23.53 e.22.1.2 108832 1ka9H 200 24.79 c.23.16.1 77308 3cu2A 237 25.51 2jmpA 107 26.72 1sr4B 261 30.17 d.151.1.1 105949 1kfiA 572 31.82 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 2v9dA 343 32.04 1edgA 380 32.29 c.1.8.3 28807 1nmsA 249 33.14 c.17.1.1 85879 1ig3A 263 34.12 b.82.6.1,c.100.1.1 62358,62359 1x31B 404 36.30 1kjnA 157 37.73 c.115.1.1 72614 2q3bA 313 37.86 1tezA 474 40.30 a.99.1.1,c.28.1.1 112409,112410 1nf2A 268 40.51 c.108.1.10 91849 3borA 237 41.45 1yw4A 341 41.63 c.56.5.7 124131 2z0hA 197 41.83 2fs2A 151 42.52 d.38.1.5 134003 1ho1A 242 44.44 c.1.24.1 61097 1yqeA 282 44.70 c.56.7.1 123879 2jrnA 163 45.10 2arkA 188 45.19 c.23.5.8 127202 1iow 306 46.03 1wqaA 455 46.15 1wbhA 214 46.29 c.1.10.1 120845 2dy0A 190 49.44 3bghA 236 51.31 1odzA 386 52.12 c.1.8.3 86889 2ywxA 157 54.07 1vixA 420 54.76 c.56.5.4,d.58.19.1 100777,100778 1kbjA 412 55.27 c.1.4.1 72280 1lt8A 406 55.53 c.1.26.1 78186 2dtrA 226 57.34 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2e18A 257 57.36 2pbrA 195 58.05 1tq8A 163 58.71 c.26.2.4 107204 1dvpA 220 60.49 a.118.9.2,g.50.1.1 19216,45358 1dcqA 278 60.89 d.211.1.1,g.45.1.1 19178,45326 1qb7A 236 60.95 c.61.1.1 34087 1n2eA 300 61.38 c.26.1.4 85268 1oj7A 408 65.84 e.22.1.2 103971 1ta9A 450 66.71 2fliA 220 67.19 c.1.2.2 133714 1atiA 505 67.89 c.51.1.1,d.104.1.1 33196,40745 1i6wA 181 69.65 c.69.1.18 61859 1b9dA 163 70.05 c.55.3.2 33649 1zjrA 211 70.65 1k20A 310 71.14 c.107.1.1 68027 1l6rA 227 72.57 c.108.1.10 77768 1vajA 214 72.78 d.309.1.1 119907 2p41A 305 74.47 2aeeA 211 75.40 c.61.1.1 126620 1gsjA 258 76.39 c.73.1.2 70397 2pjuA 225 77.47 2fp3A 316 80.24 2p4mA 219 80.55 2g6yA 217 80.97 2hqsC 118 81.08 d.79.7.1 136666 2gagB 405 81.71 1fsgA 233 83.03 c.61.1.1 34029 2tpsA 227 83.29 c.1.3.1 28591 1f5sA 211 83.83 c.108.1.4 59656 1dnpA 471 86.30 a.99.1.1,c.28.1.1 18775,31630 1eyrA 228 86.94 c.68.1.13 34514 1cf4B 44 87.24 1geeA 261 89.21 c.2.1.2 90509 2rb7A 364 89.62 1vkrA 125 89.97 c.44.2.1 108689