# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.43e-25 c.56.5.6 90921 1xovA 326 1.07e-23 b.34.11.4,c.56.5.6 122206,122207 2fb2A 340 1.904 3pmgA 561 7.436 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1u0tA 307 8.976 e.52.1.1 107567 3ce9A 354 9.162 2nxfA 322 10.19 1fnoA 417 11.04 d.58.19.1,c.56.5.4 70145,75841 3bijA 285 11.89 1o2dA 371 12.31 e.22.1.2 86591 1euaA 213 12.93 c.1.10.1 29155 2a0mA 316 13.20 c.42.1.1 125960 2a5hA 416 13.70 2ywuA 181 16.32 1rrmA 386 18.33 e.22.1.2 105081 2o3aA 178 20.62 2pgfA 371 21.10 2rbkA 261 21.36 1vajA 214 21.36 d.309.1.1 119907 1ka9H 200 21.87 c.23.16.1 77308 1rpxA 230 22.60 c.1.2.2 28536 1vljA 407 23.05 e.22.1.2 108832 1kfiA 572 23.43 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 2qt3A 403 24.18 1ig3A 263 24.81 b.82.6.1,c.100.1.1 62358,62359 1wqaA 455 27.72 1ho1A 242 27.78 c.1.24.1 61097 1fs1B 141 28.27 a.157.1.1,d.42.1.1 19252,38664 1lt8A 406 28.48 c.1.26.1 78186 1xngA 268 30.82 c.26.2.1 122186 2fiuA 99 33.49 d.58.4.16 133537 1tezA 474 34.42 a.99.1.1,c.28.1.1 112409,112410 1b9dA 163 35.70 c.55.3.2 33649 1jq5A 370 35.71 e.22.1.2 67084 2dumA 170 36.41 1sr4B 261 36.57 d.151.1.1 105949 1wbhA 214 38.05 c.1.10.1 120845 1nmsA 249 38.20 c.17.1.1 85879 1oj7A 408 38.80 e.22.1.2 103971 2aeeA 211 39.56 c.61.1.1 126620 2e18A 257 40.88 1odzA 386 41.22 c.1.8.3 86889 2g6yA 217 42.48 2hqsC 118 42.87 d.79.7.1 136666 1qb7A 236 43.91 c.61.1.1 34087 1rcuA 195 43.97 c.129.1.1 97295 2z0hA 197 44.09 2p4mA 219 44.31 2h3hA 313 44.35 1yw4A 341 44.47 c.56.5.7 124131 1iow 306 45.55 2ywjA 186 46.39 3cu2A 237 47.56 1nf2A 268 48.35 c.108.1.10 91849 2tpsA 227 50.50 c.1.3.1 28591 1kuuA 202 50.68 d.153.2.1 73019 1twdA 256 51.97 c.1.30.1 107397 1edgA 380 52.09 c.1.8.3 28807 3bghA 236 52.37 1i6wA 181 52.45 c.69.1.18 61859 1f5sA 211 53.08 c.108.1.4 59656 1gsjA 258 53.27 c.73.1.2 70397 1x31B 404 54.85 2q3bA 313 55.89 2rb7A 364 57.63 1vixA 420 58.22 c.56.5.4,d.58.19.1 100777,100778 1kjnA 157 58.79 c.115.1.1 72614 1yqeA 282 59.33 c.56.7.1 123879 2arkA 188 59.44 c.23.5.8 127202 1pea 385 59.49 1bn6A 294 61.29 c.69.1.8 34678 2p41A 305 62.08 1vhoA 346 62.11 b.49.3.1,c.56.5.4 100694,100695 1p9oA 313 62.19 c.72.3.1 94397 2ywxA 157 62.75 1o1xA 155 63.86 c.121.1.1 86553 2jmpA 107 67.38 2fp3A 316 67.57 2ie2A 222 68.77 2dy0A 190 68.78 3borA 237 69.52 2jrnA 163 70.08 1dvpA 220 70.34 a.118.9.2,g.50.1.1 19216,45358 2oczA 231 71.41 1jjiA 311 75.24 c.69.1.2 66766 2pbrA 195 75.80 1geeA 261 76.72 c.2.1.2 90509 1k20A 310 77.49 c.107.1.1 68027 1kbjA 412 78.59 c.1.4.1 72280 2v9dA 343 78.81 1ta9A 450 81.61 1fsgA 233 82.11 c.61.1.1 34029 2r8wA 332 82.22 1h7eA 245 82.75 c.68.1.13 60717 2f7lA 455 87.00 1wehA 171 88.10 c.129.1.1 114551 2qvcA 313 88.34 1qtrA 317 89.17 c.69.1.7 34660 2bvyA 475 89.29 b.1.18.2,c.1.8.3 129301,129302 1o97C 264 89.42 c.26.2.3 81232