# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.96e-24 c.56.5.6 90921 1xovA 326 5.91e-21 b.34.11.4,c.56.5.6 122206,122207 1fnoA 417 0.6237 d.58.19.1,c.56.5.4 70145,75841 1vixA 420 1.273 c.56.5.4,d.58.19.1 100777,100778 1nmsA 249 4.440 c.17.1.1 85879 1vhoA 346 6.194 b.49.3.1,c.56.5.4 100694,100695 3ce9A 354 7.889 1edgA 380 8.723 c.1.8.3 28807 2q1sA 377 8.913 1vgyA 393 10.52 c.56.5.4,d.58.19.1 100620,100621 1eg5A 384 11.46 c.67.1.3 34429 1o2dA 371 12.54 e.22.1.2 86591 1cg2A 393 12.58 c.56.5.4,d.58.19.1 33844,39360 1xfoA 357 13.99 b.49.3.1,c.56.5.4 115265,115266 2jepA 395 14.23 1yqeA 282 15.11 c.56.7.1 123879 3bijA 285 15.50 1fs1B 141 15.68 a.157.1.1,d.42.1.1 19252,38664 2ywxA 157 16.88 2vojA 371 16.89 1y0yA 353 18.86 b.49.3.1,c.56.5.4 122514,122515 1h7eA 245 19.05 c.68.1.13 60717 1eziA 228 19.07 c.68.1.13 34512 1qq9A 284 20.11 c.56.5.4 33841 1e7rA 321 21.18 c.2.1.2 29808 1odzA 386 21.28 c.1.8.3 86889 1o1xA 155 22.89 c.121.1.1 86553 2vhxA 377 24.73 1kjnA 157 28.66 c.115.1.1 72614 2pe3A 354 28.84 2ggsA 273 30.28 1y1pA 342 30.68 c.2.1.2 122550 1ta9A 450 30.70 1eguA 731 32.05 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2bllA 345 34.68 c.2.1.2 128733 2fhqA 141 36.14 b.45.1.1 133497 1a2zA 220 36.71 c.56.4.1 33794 1p3wA 404 37.30 c.67.1.3 87752 1bvwA 360 37.94 c.6.1.1 30668 1xjo 284 37.99 2dr1A 386 38.93 1hi9A 274 39.23 c.99.1.1 61063 1jq5A 370 39.28 e.22.1.2 67084 1u9jA 358 39.87 c.2.1.2 113243 1vecA 206 40.64 c.37.1.19 100575 2bvyA 475 41.75 b.1.18.2,c.1.8.3 129301,129302 1rrmA 386 42.37 e.22.1.2 105081 1jjeA 222 45.60 d.157.1.1 63117 2rb7A 364 46.94 2aebA 322 48.48 c.42.1.1 126617 1a7lA 389 49.15 c.94.1.1 35787 2fcrA 173 49.65 c.23.5.1 31151 2gh9A 386 50.91 3ct9A 356 51.27 2ef5A 290 51.72 1dxy 333 53.91 1qjwA 365 54.93 c.6.1.1 30657 1ysjA 404 55.61 c.56.5.4,d.58.19.1 123975,123976 2c0cA 362 55.76 2i02A 148 56.67 b.45.1.1 136936 1kmkA 406 57.31 c.67.1.3 68696 1wuaA 375 58.11 c.55.1.1,c.55.1.1 121281,121282 2anpA 291 58.68 c.56.5.4 127056 1vljA 407 59.03 e.22.1.2 108832 1uslA 170 59.19 c.121.1.1 99871 1evlA 401 61.21 c.51.1.1,d.104.1.1 33202,40751 1ecxA 384 62.46 c.67.1.3 34431 1qrrA 394 62.72 c.2.1.2 29824 1amp 291 63.11 3bdvA 191 63.55 2p41A 305 66.07 1a7tA 232 66.25 d.157.1.1 42041 2a0mA 316 66.27 c.42.1.1 125960 1v5vA 401 66.42 b.44.2.1,d.250.1.1 113539,113540 1bwsA 321 67.68 c.2.1.2 29812 2c2nA 339 69.10 1i2cA 404 69.43 c.2.1.2 83666 1u0tA 307 69.51 e.52.1.1 107567 2rbkA 261 70.05 1ztcA 221 70.31 d.157.1.11 125635 1elqA 390 71.43 c.67.1.3 34436 1yloA 348 71.96 b.49.3.1,c.56.5.4 123659,123660 1mkzA 172 72.04 c.57.1.1 84998 2bvwA 362 72.08 c.6.1.1 30666 1vajA 214 74.28 d.309.1.1 119907 2dm6A 333 76.02 b.35.1.2,c.2.1.1 131567,131568 2jhpA 644 77.05 2fvgA 340 77.59 b.49.3.1,c.56.5.4 134201,134202 1nf2A 268 78.31 c.108.1.10 91849 1jjtA 228 78.33 d.157.1.1 63139 1wlyA 333 78.36 4mbp 370 80.45 2pzmA 330 80.86 2cevA 299 81.03 c.42.1.1 32576 1rh9A 373 82.16 c.1.8.3 118773 2g1uA 155 83.13 2d0oB 125 85.03 c.51.3.2 131078 1vheA 373 85.49 b.49.3.1,c.56.5.4 100669,100670 1tuoA 464 86.65 2citA 282 88.20 c.1.8.3 130499 1bsvA 321 89.19 c.2.1.2 29809 1e4eA 343 89.64 c.30.1.2,d.142.1.1 59221,59222 3bghA 236 89.75 2fcr 173 90.00