# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.02e-23 c.56.5.6 90921 1xovA 326 2.72e-21 b.34.11.4,c.56.5.6 122206,122207 2dr1A 386 3.454 3bijA 285 5.519 1yqeA 282 8.849 c.56.7.1 123879 1nmsA 249 10.13 c.17.1.1 85879 2hufA 393 10.23 1o2dA 371 10.44 e.22.1.2 86591 1oj7A 408 11.42 e.22.1.2 103971 3ce9A 354 11.77 1p5dX 463 12.38 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1rrmA 386 13.09 e.22.1.2 105081 1vljA 407 16.66 e.22.1.2 108832 1kjnA 157 16.89 c.115.1.1 72614 1fnoA 417 17.56 d.58.19.1,c.56.5.4 70145,75841 1jq5A 370 20.16 e.22.1.2 67084 1eg5A 384 22.82 c.67.1.3 34429 1p3wA 404 23.11 c.67.1.3 87752 2ywxA 157 23.96 2nxfA 322 25.30 1tuoA 464 27.41 1vixA 420 27.46 c.56.5.4,d.58.19.1 100777,100778 1u0tA 307 28.90 e.52.1.1 107567 2vhxA 377 29.50 1ta9A 450 29.80 1dxy 333 30.05 1vajA 214 30.89 d.309.1.1 119907 1f0kA 364 31.29 c.87.1.2 35465 2vojA 371 31.94 2q4zA 312 32.53 1k20A 310 32.71 c.107.1.1 68027 1aj2 282 36.57 1h7eA 245 37.49 c.68.1.13 60717 1tme3 236 38.59 3cdxA 354 40.22 1k2yX 463 41.25 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2fhqA 141 42.65 b.45.1.1 133497 2oczA 231 42.82 2gu2A 312 44.00 1qq9A 284 44.51 c.56.5.4 33841 1x31B 404 44.85 1dxyA 333 48.79 c.2.1.4,c.23.12.1 30094,31354 2cukA 311 51.90 3bdvA 191 52.03 3ct9A 356 52.15 1dhpA 292 52.93 c.1.10.1 29097 1vjoA 393 54.42 c.67.1.3 100827 1wqaA 455 54.91 1o1xA 155 54.98 c.121.1.1 86553 2fb2A 340 56.14 2p41A 305 56.55 1l7yA 94 56.70 d.15.1.6 73676 1j4aA 333 59.47 c.2.1.4,c.23.12.1 71502,71503 2z9wA 392 60.08 1ecxA 384 63.58 c.67.1.3 34431 1yw4A 341 65.62 c.56.5.7 124131 1cg2A 393 66.21 c.56.5.4,d.58.19.1 33844,39360 1itg 166 67.25 2jfuA 291 68.34 1kmkA 406 68.62 c.67.1.3 68696 1hi9A 274 69.83 c.99.1.1 61063 1fs1B 141 70.61 a.157.1.1,d.42.1.1 19252,38664 1evlA 401 71.25 c.51.1.1,d.104.1.1 33202,40751 1vhoA 346 71.62 b.49.3.1,c.56.5.4 100694,100695 1bvwA 360 72.30 c.6.1.1 30668 1ybhA 590 73.59 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 1nf2A 268 73.71 c.108.1.10 91849 2pe3A 354 77.10 2j3mA 572 77.67 2a0mA 316 77.75 c.42.1.1 125960 1jf9A 408 77.82 c.67.1.3 62931 2gt1A 326 78.86 2v9dA 343 80.38 1ooeA 236 80.66 c.2.1.2 87196 1gq6A 313 82.07 c.42.1.1 70341 1nal1 297 82.30 1rkqA 282 82.81 c.108.1.10 97621 2yrrA 353 83.29 1iow 306 83.52 2dy0A 190 85.77 2ggsA 273 86.42 2e18A 257 87.47 1mx3A 347 87.72 c.2.1.4,c.23.12.1 79638,79639 1l1qA 186 88.42 c.61.1.1 77653 1y0bA 197 89.05 c.61.1.1 122476