# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.66e-14 c.56.5.6 90921 1xovA 326 4.21e-12 b.34.11.4,c.56.5.6 122206,122207 1ta9A 450 0.8549 3ce9A 354 4.539 3bijA 285 4.562 1iow 306 6.801 1uslA 170 8.835 c.121.1.1 99871 1gdhA 320 9.277 c.2.1.4,c.23.12.1 30095,31355 1u3dA 509 10.25 a.99.1.1,c.28.1.1 107638,107639 2f62A 161 10.26 c.23.14.1 133021 1wqaA 455 10.37 2o14A 375 11.05 1qdlB 195 12.70 c.23.16.1 31437 2hufA 393 13.37 2gcgA 330 13.68 1mx3A 347 14.32 c.2.1.4,c.23.12.1 79638,79639 1yw4A 341 14.40 c.56.5.7 124131 2fhqA 141 15.20 b.45.1.1 133497 2f7lA 455 15.89 1iowA 306 16.40 c.30.1.2,d.142.1.1 31713,41481 2ywjA 186 16.41 3b6iA 198 17.26 1vffA 423 18.37 c.1.8.4 120033 2qj8A 332 18.47 1i1qB 192 18.69 c.23.16.1 61544 2j07A 420 18.85 a.99.1.1,c.28.1.1 137891,137892 2ywxA 157 19.14 2i02A 148 19.97 b.45.1.1 136936 1wl8A 189 20.25 c.23.16.1 120997 1p9lA 245 20.28 c.2.1.3,d.81.1.3 94393,94394 1l7dA 384 20.67 c.2.1.4,c.23.12.2 77774,77775 1tkjA 284 20.74 c.56.5.4 119296 2yvqA 143 22.00 1fl2A 310 22.59 c.3.1.5,c.3.1.5 59869,59870 1u11A 182 22.97 c.23.8.1 107576 2zg5A 397 23.52 2dvtA 327 24.29 c.1.9.15 131793 1xjo 284 26.22 1c7gA 456 26.36 c.67.1.2 90415 1r3dA 264 26.47 c.69.1.35 111680 2bvyA 475 26.85 b.1.18.2,c.1.8.3 129301,129302 1eyrA 228 27.04 c.68.1.13 34514 2o4cA 380 27.07 1jq5A 370 28.12 e.22.1.2 67084 2c92A 160 28.79 1dfoA 417 28.86 c.67.1.4 34480 2c1lA 358 28.96 2nt0A 497 29.47 b.71.1.2,c.1.8.3 138561,138562 2arkA 188 29.66 c.23.5.8 127202 2a5lA 200 29.82 c.23.5.8 126176 2f4nA 273 30.15 2amjA 204 31.63 2cstA 411 31.82 c.67.1.1 34273 1oboA 169 31.96 c.23.5.1 86776 1wwkA 307 32.19 1vjoA 393 32.44 c.67.1.3 100827 1vljA 407 32.94 e.22.1.2 108832 1qp8A 303 33.02 c.2.1.4,c.23.12.1 30092,31352 1ajsA 412 33.31 c.67.1.1 34276 1p5dX 463 36.11 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1l9cA 389 39.60 c.3.1.2,d.16.1.3 77815,77816 2o20A 332 40.82 2or4A 709 41.59 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2gsaA 432 42.06 c.67.1.4 34446 1dhr 241 42.59 2pjmA 226 43.18 2hq7A 146 43.26 b.45.1.1 136657 3cdxA 354 44.95 1o2dA 371 45.81 e.22.1.2 86591 3bhxA 709 45.88 2fcjA 119 45.88 c.136.1.1 133269 2dtvA 397 46.62 3cniA 156 46.84 1ooeA 236 46.90 c.2.1.2 87196 2c6cA 707 47.12 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2dbqA 334 48.44 1ka9H 200 49.98 c.23.16.1 77308 1xmpA 170 50.43 c.23.8.1 115521 1xseA 295 51.44 c.2.1.2 115925 1z15A 344 53.54 1e5dA 402 56.49 c.23.5.1,d.157.1.3 31208,42061 1l6rA 227 56.88 c.108.1.10 77768 3co8A 380 58.93 1arsA 396 58.94 c.67.1.1 34287 3bi1A 709 59.75 1tezA 474 59.78 a.99.1.1,c.28.1.1 112409,112410 1lsuA 147 60.55 c.2.1.9 74250 1od6A 160 60.68 c.26.1.3 86836 1o4vA 183 60.73 c.23.8.1 86628 1lk5A 229 60.81 c.124.1.4,d.58.40.1 73960,73961 1xv5A 401 60.94 1de4C 640 62.02 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 2pjkA 178 62.50 1rrmA 386 62.65 e.22.1.2 105081 1cznA 169 63.43 c.23.5.1 31181 1qq9A 284 63.52 c.56.5.4 33841 2v9dA 343 65.74 1ujnA 348 66.76 e.22.1.1 99460 1nbwB 117 66.85 c.51.3.2 80396 1lssA 140 68.08 c.2.1.9 74246 1tuoA 464 68.84 1bu5A 147 69.08 c.23.5.1 31155 1uj6A 227 70.72 c.124.1.4,d.58.40.1 107898,107899 1sg6A 393 71.39 e.22.1.1 105522 1kdvA 370 73.03 c.41.1.2 68486 1zq9A 285 73.08 c.66.1.24 125505 1fuiA 591 73.78 b.43.2.1,c.85.1.1 25674,35444 1usgA 346 74.65 c.93.1.1 99864 1dapA 320 75.91 c.2.1.3,d.81.1.3 30053,39968 2bkwA 385 76.40 c.67.1.3 128714 2q0lA 311 77.10 1t0bA 252 77.12 c.23.16.6 106199 2i5gA 325 77.42 2gf3A 389 77.44 c.3.1.2,d.16.1.3 135070,135071 2cukA 311 78.37 1srrA 124 79.18 c.23.1.1 31110 2liv 344 79.45 2cjpA 328 81.15 2hbvA 334 82.31 c.1.9.15 136320 2q5cA 196 82.37 1rcf 169 82.84 2ez2A 456 85.03 1j9eA 147 85.07 c.23.5.1 62756 1y5eA 169 85.71 c.57.1.1 122632 1h7eA 245 86.08 c.68.1.13 60717 1cozA 129 86.98 c.26.1.2 31598 1eexB 224 87.09 c.51.3.1 33213 1geeA 261 87.42 c.2.1.2 90509 1qjcA 158 88.39 c.26.1.3 63328 1uxoA 192 89.07 c.69.1.31 108121 1s3iA 310 89.63 b.46.1.1,c.65.1.1 98435,98436 1hqkA 154 89.92 c.16.1.1 65902