# List of top-scoring protein chains for T0425.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.44e-38 c.56.5.6 90921 1xovA 326 1.05e-16 b.34.11.4,c.56.5.6 122206,122207 1ziuA 370 1.168 c.94.1.1 125138 2ga8A 359 5.136 1nt0A 286 6.472 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 2nxiA 263 6.999 1ot8A 239 7.356 d.211.1.1 93507 2nwrA 267 7.375 1pe1A 267 7.430 c.1.10.4 94591 1lroA 267 7.544 c.1.10.4 78161 1zhaA 267 9.857 3b5nD 64 12.46 1y88A 199 12.62 a.60.4.3,c.52.1.30 116560,116561 1s6yA 450 14.66 c.2.1.5,d.162.1.2 105314,105315 2jmpA 107 16.75 2nxgA 263 17.62 2pvpA 367 18.16 2nx3A 267 19.44 1mdqA 371 19.85 c.94.1.1 35783 1qokA 282 19.92 b.1.1.1,b.1.1.1 20492,20493 2qryA 330 20.31 2ef9A 267 20.68 1mh3A 421 22.28 a.4.1.1,c.94.1.1 79112,79113 1ytvA 366 22.32 c.94.1.1 124016 2nxwA 565 22.72 1ei1A 391 23.35 d.14.1.3,d.122.1.2 37570,41104 1iudA 380 23.95 c.94.1.1 35786 1r6zA 509 24.09 b.34.14.1,c.94.1.1 97169,97170 1yznA 185 24.12 c.37.1.8 124284 1y4tA 322 24.14 c.94.1.1 116464 1ezoA 370 24.28 c.94.1.1 59539 1mpbA 370 24.70 c.94.1.1 35780 1fqbA 370 24.72 c.94.1.1 59985 1n3xA 366 24.92 c.94.1.1 91609 1anfA 370 24.92 c.94.1.1 35776 1mdp1 363 25.58 1e5dA 402 26.01 c.23.5.1,d.157.1.3 31208,42061 1t0kA 381 26.30 c.94.1.1 106214 1m22A 503 26.51 c.117.1.1 78464 2yxbA 161 26.53 1nmuA 382 27.10 c.94.1.1 80665 1b25A 619 27.74 a.110.1.1,d.152.1.1 19044,41796 1nl5A 366 28.26 c.94.1.1 91953 2c30A 321 31.68 1e19A 314 32.71 c.73.1.1 34967 2ok2A 402 32.72 1jvyA 372 33.45 c.94.1.1 63308 2j13A 247 34.11 c.6.2.3 137934 1gq6A 313 38.97 c.42.1.1 70341 1svxB 395 39.20 c.94.1.1 106059 1qwgA 251 39.94 c.1.27.1 96473 1o4vA 183 40.76 c.23.8.1 86628 1uikA 418 41.19 b.82.1.2,b.82.1.2 107878,107879 1a7lA 389 41.20 c.94.1.1 35787 1xtlA 175 41.58 1y4cA 494 42.05 1r66A 337 42.08 c.2.1.2 97146 1iovA 306 42.44 c.30.1.2,d.142.1.1 31714,41482 1s4iA 175 42.69 1r6dA 337 43.05 c.2.1.2 97148 1sbpA 310 44.60 c.94.1.1 35760 1iowA 306 47.35 c.30.1.2,d.142.1.1 31713,41481 2opvA 85 47.88 2p0sA 143 52.24 1y6bA 366 53.90 2j01C 229 54.11 e.24.1.1 137861 2v49C 229 55.62 1szbA 170 56.33 b.23.1.1,g.3.11.1 106145,106146 2fupA 157 56.45 a.47.5.1 134184 3bniA 229 59.44 2vgqA 477 59.88 2aepH 217 61.11 b.1.1.2 126639 1tt4A 396 61.59 d.128.1.3 107289 2enjA 138 62.58 1fobA 334 63.07 c.1.8.3 83255 1s1iU 126 63.45 i.1.1.1 105195 2nvuB 805 64.15 c.111.1.2,c.94.1.1 138661,138662 1laxA 370 65.56 c.94.1.1 84576 2hpaA 342 66.69 c.60.1.2 33985 2fblA 153 71.43 d.63.1.2 133249 1u3nA 162 72.24 3c3dA 311 74.52 1pk3A 89 75.08 a.60.1.2 118715 1w72H 223 77.52 b.1.1.1,b.1.1.2 114299,114300 3cqyA 370 77.80 2gfqA 298 79.86 c.56.7.1 135106 1sqmA 610 80.73 a.118.1.7,b.98.1.1,d.92.1.13 105941,105942,105943 1uctA 218 80.86 b.1.1.4,b.1.1.4 88467,88468 1lehA 364 83.41 c.2.1.7,c.58.1.1 30268,33916 1q8yA 373 83.82 d.144.1.7 96234 2ozlA 365 84.03 1nd6A 354 85.15 c.60.1.2 80407 1ovzA 207 85.38 b.1.1.4,b.1.1.4 87473,87474 1i9sA 210 86.21 c.45.1.1 62099 1howA 373 86.33 d.144.1.7 41679 3c4mA 539 89.20 2oh4A 316 89.69 1hsjA 487 89.96 a.4.5.28,c.94.1.1 61237,61238