# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 6.56e-27 c.56.5.6 90921 1xovA 326 1.53e-23 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.5766 1jq5A 370 0.8673 e.22.1.2 67084 1cg2A 393 0.9426 c.56.5.4,d.58.19.1 33844,39360 1iowA 306 0.9899 c.30.1.2,d.142.1.1 31713,41481 1iow 306 1.555 1gsa 316 3.153 2q7dA 346 3.163 1p5dX 463 5.905 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1uslA 170 6.887 c.121.1.1 99871 2i6jA 161 7.503 1kq3A 376 7.574 e.22.1.2 68790 2iuyA 342 8.157 3ce9A 354 8.403 3b2yA 275 8.600 1xdwA 331 8.981 1sbpA 310 10.88 c.94.1.1 35760 1d3vA 323 13.23 c.42.1.1 32559 1dxy 333 14.55 1i7nA 309 14.56 c.30.1.5,d.142.1.3 83681,83682 2g76A 335 15.25 1u0tA 307 15.53 e.52.1.1 107567 2fp3A 316 15.67 1rrmA 386 16.03 e.22.1.2 105081 1wqaA 455 16.27 2bkwA 385 16.33 c.67.1.3 128714 2h0aA 276 16.49 1gsaA 316 17.49 c.30.1.3,d.142.1.1 31718,41477 2nuwA 288 19.71 2cukA 311 19.79 2i87A 364 20.32 2aebA 322 20.37 c.42.1.1 126617 2odtX 328 20.42 1hkhA 279 21.00 c.69.1.12 90628 2f7lA 455 21.45 2gcgA 330 21.60 2a0mA 316 22.12 c.42.1.1 125960 1nnfA 309 22.21 c.94.1.1 85903 1wwkA 307 22.82 2rfgA 297 22.91 1tuoA 464 23.82 1tfuA 157 23.92 c.26.1.3 106859 1od6A 160 23.93 c.26.1.3 86836 2a1rA 430 24.67 1h1yA 228 24.98 c.1.2.2 76506 1wohA 305 25.39 c.42.1.1 109446 2pi1A 334 25.56 2zadA 345 25.62 3pmgA 561 25.68 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2bs9A 503 26.02 b.71.1.2,c.1.8.3 129062,129063 1dnpA 471 26.42 a.99.1.1,c.28.1.1 18775,31630 1vhoA 346 26.66 b.49.3.1,c.56.5.4 100694,100695 1o2dA 371 27.14 e.22.1.2 86591 2a67A 167 27.24 2gh9A 386 27.27 2ppwA 216 27.34 2pcqA 283 27.38 2o3aA 178 28.28 2d0iA 333 28.30 2cvjA 180 28.43 1ad2A 228 29.80 e.24.1.1 43353 2pezA 179 30.01 1w3iA 293 31.13 c.1.10.1 109152 2r91A 286 32.38 1j4aA 333 33.34 c.2.1.4,c.23.12.1 71502,71503 1h3fA 432 33.71 c.26.1.1,d.66.1.4 76631,76632 1o1xA 155 33.76 c.121.1.1 86553 2bneA 241 34.14 c.73.1.3 128824 1pnoA 180 34.37 c.31.1.4 94953 1yqeA 282 35.40 c.56.7.1 123879 1v93A 296 35.53 c.1.23.1 100532 2rb7A 364 36.67 2eo5A 419 37.19 2ehhA 294 38.13 2dr3A 247 39.05 2qvbA 297 39.29 1ccwA 137 39.31 c.23.6.1 31238 2hdyA 440 39.90 2dbqA 334 40.17 2va1A 256 40.32 1ta9A 450 40.55 1vljA 407 40.91 e.22.1.2 108832 1zp4A 304 42.18 2a1fA 247 43.28 c.73.1.3 125991 1brtA 277 44.23 c.69.1.12 34699 1xv5A 401 45.85 2fqxA 318 46.06 2bcoA 350 46.44 c.56.5.7 128302 1e4eA 343 46.49 c.30.1.2,d.142.1.1 59221,59222 1xvxA 312 46.64 c.94.1.1 116097 1bx4A 345 46.73 c.72.1.1 34935 1d4oA 184 46.74 c.31.1.4 31748 1t3iA 420 47.28 c.67.1.3 106354 1muwA 386 48.90 c.1.15.3 79495 1w24A 182 49.13 d.159.1.7 120579 2ov7A 137 49.14 1yloA 348 51.62 b.49.3.1,c.56.5.4 123659,123660 1brt 277 51.94 2ax4A 198 53.07 2o14A 375 55.57 1nofA 383 55.63 b.71.1.2,c.1.8.3 92020,92021 1gdhA 320 56.21 c.2.1.4,c.23.12.1 30095,31355 2gu2A 312 56.40 1atg 231 57.88 1anfA 370 58.35 c.94.1.1 35776 1q35A 320 58.67 c.94.1.1 95661 2p0aA 344 60.36 1auk 489 60.96 2ojpA 292 61.13 1xc1A 309 62.76 c.94.1.1 109543 2z06A 252 62.83 1xjcA 169 62.84 c.37.1.10 115387 1dbqA 289 63.15 c.93.1.1 35666 1vgyA 393 63.56 c.56.5.4,d.58.19.1 100620,100621 1ceo 343 64.08 3cpxA 321 64.47 2gcuA 245 65.46 1ytvA 366 66.35 c.94.1.1 124016 1vheA 373 67.02 b.49.3.1,c.56.5.4 100669,100670 1hl2A 297 67.39 c.1.10.1 83581 1vecA 206 67.47 c.37.1.19 100575 1y9uA 323 67.82 c.94.1.1 116594 1tqjA 230 67.99 c.1.2.2 107228 2fssA 365 68.80 1qtwA 285 68.91 c.1.15.1 29392 3c9fA 557 69.89 1eg5A 384 70.06 c.67.1.3 34429 1xkyA 301 71.12 c.1.10.1 122094 1g3qA 237 71.31 c.37.1.10 60237 1snyA 267 73.65 c.2.1.2 105833 1y37A 304 73.81 2onsA 314 74.22 1ivnA 190 76.42 c.23.10.5 83719 1a8qA 274 76.72 c.69.1.12 34702 1f9aA 168 76.74 c.26.1.3 31602 2vlbA 251 77.18 2qeeA 437 77.90 1dxyA 333 77.90 c.2.1.4,c.23.12.1 30094,31354 1ycdA 243 77.99 1qgoA 264 78.01 c.92.1.2 35596 1rd5A 262 78.74 c.1.2.4 111772 1sffA 426 79.53 c.67.1.4 105482 1ydgA 211 81.79 c.23.5.8 116614 3b6iA 198 82.32 1i60A 278 83.12 c.1.15.4 71118 1qwgA 251 83.27 c.1.27.1 96473 1anf 370 85.06 2e7uA 424 85.30 3canA 182 85.47 2j6iA 364 86.90 2fyfA 398 88.27 1miwA 404 88.42 a.173.1.1,d.218.1.4 79162,79163 2j0aA 280 88.84