# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.16e-28 c.56.5.6 90921 1xovA 326 1.28e-24 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.4029 2q7dA 346 0.6334 1cg2A 393 1.386 c.56.5.4,d.58.19.1 33844,39360 1iowA 306 1.539 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 1.817 e.22.1.2 67084 1iow 306 2.442 1p5dX 463 3.960 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2odtX 328 4.514 2i6jA 161 4.896 2eklA 313 5.218 2bkwA 385 7.708 c.67.1.3 128714 2f7lA 455 8.174 1gsa 316 8.396 3ce9A 354 9.743 2fp3A 316 10.04 1tuoA 464 10.24 1u0tA 307 10.37 e.52.1.1 107567 1sbpA 310 10.52 c.94.1.1 35760 3b2yA 275 10.70 1d3vA 323 10.85 c.42.1.1 32559 2bs9A 503 12.13 b.71.1.2,c.1.8.3 129062,129063 1xdwA 331 12.18 1rrmA 386 12.64 e.22.1.2 105081 2a1rA 430 12.85 2iuyA 342 13.02 1uslA 170 13.26 c.121.1.1 99871 1wqaA 455 14.78 1gsaA 316 15.36 c.30.1.3,d.142.1.1 31718,41477 2a0mA 316 18.89 c.42.1.1 125960 2cvjA 180 19.23 1o2dA 371 19.41 e.22.1.2 86591 1dxy 333 20.15 1h1yA 228 21.13 c.1.2.2 76506 2i87A 364 21.47 1kq3A 376 22.13 e.22.1.2 68790 1tfuA 157 22.29 c.26.1.3 106859 2cukA 311 22.31 2ov7A 137 23.12 1wwkA 307 24.04 1nnfA 309 24.30 c.94.1.1 85903 2nuwA 288 24.38 2aebA 322 25.08 c.42.1.1 126617 1yqeA 282 25.49 c.56.7.1 123879 1ivnA 190 26.16 c.23.10.5 83719 2h0aA 276 26.83 1wohA 305 27.34 c.42.1.1 109446 1vljA 407 27.96 e.22.1.2 108832 2a67A 167 28.91 1xc1A 309 29.08 c.94.1.1 109543 1xvxA 312 29.11 c.94.1.1 116097 1w24A 182 29.42 d.159.1.7 120579 1vhoA 346 29.65 b.49.3.1,c.56.5.4 100694,100695 2ppwA 216 30.59 1y9uA 323 30.80 c.94.1.1 116594 2gcgA 330 30.91 1ta9A 450 31.13 2bneA 241 32.18 c.73.1.3 128824 2g76A 335 32.25 2zadA 345 32.71 1i7nA 309 32.92 c.30.1.5,d.142.1.3 83681,83682 2pcqA 283 33.08 1od6A 160 33.45 c.26.1.3 86836 1v93A 296 33.68 c.1.23.1 100532 1yloA 348 34.68 b.49.3.1,c.56.5.4 123659,123660 2gh9A 386 36.15 2dbqA 334 36.27 2ehhA 294 37.40 1ad2A 228 38.50 e.24.1.1 43353 1o1xA 155 38.51 c.121.1.1 86553 2qvbA 297 39.38 2rfgA 297 40.85 1w3iA 293 41.77 c.1.10.1 109152 1tqjA 230 41.94 c.1.2.2 107228 2onsA 314 42.07 1h3fA 432 42.18 c.26.1.1,d.66.1.4 76631,76632 2a1fA 247 42.25 c.73.1.3 125991 1e4eA 343 43.85 c.30.1.2,d.142.1.1 59221,59222 1t3iA 420 44.01 c.67.1.3 106354 2o3aA 178 44.03 1dnpA 471 44.40 a.99.1.1,c.28.1.1 18775,31630 2irpA 208 44.62 1q35A 320 45.43 c.94.1.1 95661 2gu2A 312 45.58 2r91A 286 45.59 1ceo 343 46.22 2d0iA 333 47.19 3canA 182 49.46 1eg5A 384 49.76 c.67.1.3 34429 1miwA 404 50.43 a.173.1.1,d.218.1.4 79162,79163 1jx4A 352 50.54 d.240.1.1,e.8.1.7 90378,90379 1zp4A 304 50.80 1j4aA 333 50.94 c.2.1.4,c.23.12.1 71502,71503 1xv5A 401 52.03 2id1A 130 52.37 2ojpA 292 53.01 1i60A 278 54.03 c.1.15.4 71118 3pmgA 561 55.44 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1vheA 373 55.82 b.49.3.1,c.56.5.4 100669,100670 1ytvA 366 56.28 c.94.1.1 124016 1atg 231 56.81 1xjcA 169 57.49 c.37.1.10 115387 1nofA 383 57.62 b.71.1.2,c.1.8.3 92020,92021 1y0yA 353 57.74 b.49.3.1,c.56.5.4 122514,122515 1xfkA 336 58.32 c.42.1.1 115264 1anfA 370 58.43 c.94.1.1 35776 1bx4A 345 60.42 c.72.1.1 34935 2fk5A 200 60.82 2pi1A 334 62.59 1a7j 290 63.71 2pezA 179 64.12 1vgyA 393 64.61 c.56.5.4,d.58.19.1 100620,100621 1k0wA 231 64.91 c.74.1.1 77220 1ccwA 137 65.46 c.23.6.1 31238 2g4rA 160 65.79 2va1A 256 65.99 1nmsA 249 66.40 c.17.1.1 85879 2o14A 375 66.64 2jejA 358 68.66 d.240.1.1,e.8.1.7 138284,138285 1j2rA 199 69.17 c.33.1.3 90788 2pajA 492 69.25 1lq9A 112 70.12 d.58.4.3 78129 2hdyA 440 71.41 1gq6A 313 71.67 c.42.1.1 70341 1sffA 426 72.83 c.67.1.4 105482 1xkyA 301 75.15 c.1.10.1 122094 1e7wA 291 75.76 c.2.1.2 59373 1muwA 386 76.51 c.1.15.3 79495 2pe3A 354 76.64 1jmvA 141 77.26 c.26.2.4 66897 1gdhA 320 77.60 c.2.1.4,c.23.12.1 30095,31355 1meoA 209 77.68 c.65.1.1 79035 1ybdA 239 78.14 c.73.1.3 122884 1im5A 180 78.19 c.33.1.3 66211 2z06A 252 78.81 2rb7A 364 79.63 2fliA 220 80.05 c.1.2.2 133714 2fqxA 318 80.08 2j0aA 280 80.91 1g3qA 237 80.92 c.37.1.10 60237 1wjgA 137 81.70 c.26.2.4 114696 1hkhA 279 82.09 c.69.1.12 90628 2e7uA 424 82.85 1vecA 206 83.04 c.37.1.19 100575 1anf 370 84.00 2cvhA 220 84.38 2qryA 330 86.38 2gcuA 245 87.37 4eugA 229 87.51 c.18.1.1 31019 1dxyA 333 87.96 c.2.1.4,c.23.12.1 30094,31354 2nacA 393 88.47 c.2.1.4,c.23.12.1 30088,31348 1tq8A 163 88.49 c.26.2.4 107204 2pt2A 334 89.91 2atsA 292 89.95 c.1.10.1 127306