# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.72e-30 c.56.5.6 90921 1xovA 326 8.06e-26 b.34.11.4,c.56.5.6 122206,122207 1iowA 306 0.6925 c.30.1.2,d.142.1.1 31713,41481 2q7dA 346 1.148 1iow 306 1.387 3bijA 285 2.118 1sbpA 310 3.565 c.94.1.1 35760 2ov7A 137 3.947 2eklA 313 4.093 1gsa 316 4.841 1nnfA 309 5.247 c.94.1.1 85903 1t3iA 420 6.003 c.67.1.3 106354 1xc1A 309 6.422 c.94.1.1 109543 1cg2A 393 6.558 c.56.5.4,d.58.19.1 33844,39360 2z0mA 337 6.752 1xdwA 331 6.804 1jq5A 370 7.493 e.22.1.2 67084 1q35A 320 7.503 c.94.1.1 95661 2a1rA 430 7.629 1rrmA 386 7.684 e.22.1.2 105081 1xvxA 312 8.064 c.94.1.1 116097 1dxy 333 8.137 2i6jA 161 8.622 1gsaA 316 9.739 c.30.1.3,d.142.1.1 31718,41477 2f7lA 455 10.00 2bkwA 385 10.73 c.67.1.3 128714 2cukA 311 10.76 1ad2A 228 11.30 e.24.1.1 43353 1tqjA 230 12.33 c.1.2.2 107228 1i7nA 309 12.84 c.30.1.5,d.142.1.3 83681,83682 1vecA 206 12.86 c.37.1.19 100575 2pt2A 334 13.82 1lxjA 104 14.32 d.58.48.1 84736 1h1yA 228 14.65 c.1.2.2 76506 1atg 231 14.67 2gh9A 386 14.94 1wqaA 455 16.04 1u0tA 307 17.05 e.52.1.1 107567 1atgA 231 17.56 c.94.1.1 35834 2odtX 328 17.71 2iuyA 342 18.06 1y9uA 323 18.58 c.94.1.1 116594 3ce9A 354 19.61 2irpA 208 21.21 1xjcA 169 21.60 c.37.1.10 115387 1uslA 170 22.51 c.121.1.1 99871 1jf9A 408 22.60 c.67.1.3 62931 3canA 182 24.10 1tezA 474 24.80 a.99.1.1,c.28.1.1 112409,112410 1kjnA 157 26.00 c.115.1.1 72614 1y4tA 322 26.20 c.94.1.1 116464 2ppwA 216 26.29 2fp3A 316 27.01 1k0wA 231 27.04 c.74.1.1 77220 1m5wA 243 27.06 c.1.24.1 84836 2dpiA 420 27.84 d.240.1.1,e.8.1.7 131612,131613 2d0iA 333 28.09 1tuoA 464 28.18 1owlA 484 28.72 a.99.1.1,c.28.1.1 93647,93648 1yqeA 282 29.22 c.56.7.1 123879 1ccwA 137 29.92 c.23.6.1 31238 1v93A 296 30.47 c.1.23.1 100532 2eo5A 419 30.65 1vgyA 393 31.44 c.56.5.4,d.58.19.1 100620,100621 1d4oA 184 31.54 c.31.1.4 31748 1vljA 407 31.75 e.22.1.2 108832 2yxbA 161 32.22 2gcgA 330 32.27 2fk5A 200 32.65 1p5dX 463 33.04 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3b2yA 275 33.36 2i87A 364 34.43 1zp4A 304 35.41 2pg9A 337 36.29 2g76A 335 36.96 1qnaA 200 37.22 d.129.1.1,d.129.1.1 41226,41227 2q0oA 236 39.06 1jx4A 352 39.09 d.240.1.1,e.8.1.7 90378,90379 3berA 249 39.50 1wwkA 307 39.71 1o1xA 155 40.62 c.121.1.1 86553 1a7j 290 43.06 1eg5A 384 43.63 c.67.1.3 34429 1dnpA 471 43.90 a.99.1.1,c.28.1.1 18775,31630 1qwgA 251 44.14 c.1.27.1 96473 2oxcA 230 44.72 1vhoA 346 44.73 b.49.3.1,c.56.5.4 100694,100695 2dbqA 334 45.26 1o2dA 371 47.09 e.22.1.2 86591 1j4aA 333 47.46 c.2.1.4,c.23.12.1 71502,71503 2rfgA 297 47.47 1amfA 233 47.73 c.94.1.1 35833 2p0aA 344 49.00 1tq8A 163 50.84 c.26.2.4 107204 1ivnA 190 52.05 c.23.10.5 83719 1miwA 404 52.55 a.173.1.1,d.218.1.4 79162,79163 1yloA 348 53.01 b.49.3.1,c.56.5.4 123659,123660 1g3qA 237 53.62 c.37.1.10 60237 2nuwA 288 53.72 2cvjA 180 54.46 2pezA 179 54.94 2ojpA 292 55.99 1qtwA 285 56.02 c.1.15.1 29392 2rb7A 364 56.08 1ytvA 366 57.13 c.94.1.1 124016 1dxyA 333 57.58 c.2.1.4,c.23.12.1 30094,31354 2pi1A 334 57.78 1yqgA 263 58.43 1b9bA 255 58.72 c.1.1.1 28531 2pcqA 283 59.15 1xkrA 206 59.55 d.252.1.1 115421 2g4rA 160 59.86 1hl2A 297 60.15 c.1.10.1 83581 2h5yA 254 61.45 2f1rA 171 61.84 1yqhA 109 61.91 d.58.48.1 123886 2jejA 358 62.32 d.240.1.1,e.8.1.7 138284,138285 2r91A 286 62.43 1eluA 390 64.06 c.67.1.3 34434 1kq3A 376 64.94 e.22.1.2 68790 1t5iA 172 66.37 c.37.1.19 106450 1u3dA 509 67.25 a.99.1.1,c.28.1.1 107638,107639 3pmgA 561 67.55 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2a3nA 355 68.02 2hxwA 237 68.16 2i4iA 417 68.55 1z7aA 308 70.59 c.6.2.6 124591 1amf 233 71.06 1ionA 243 71.59 c.37.1.10 62633 1e4eA 343 71.65 c.30.1.2,d.142.1.1 59221,59222 2ebnA 289 71.82 c.1.8.5 28990 1anfA 370 72.53 c.94.1.1 35776 2j0aA 280 72.85 1ta9A 450 73.37 2a67A 167 73.39 1zbfA 142 73.50 c.55.3.1 124850 1rd5A 262 74.32 c.1.2.4 111772 2opiA 212 74.78 2e7uA 424 75.42 2atsA 292 75.66 c.1.10.1 127306 1yb1A 272 76.46 c.2.1.2 116599 1l8nA 679 76.52 c.1.8.10,d.92.2.2 84564,84565 1od6A 160 76.57 c.26.1.3 86836 1n08A 163 77.16 b.43.5.1 79730 1pswA 348 77.20 c.87.1.7 88287 1anf 370 77.60 2fiuA 99 79.91 d.58.4.16 133537 2ehhA 294 79.94 1df7A 159 80.69 c.71.1.1 34885 2ew8A 249 80.94 c.2.1.2 132447 2onsA 314 81.57 1ycdA 243 82.55 1lssA 140 82.59 c.2.1.9 74246 1wcwA 261 83.41 1byi 224 84.04 1w3iA 293 84.90 c.1.10.1 109152 2hdyA 440 85.24 1twdA 256 85.47 c.1.30.1 107397 2qcvA 332 85.68 1pnoA 180 87.71 c.31.1.4 94953 2ph3A 245 89.58 2dfzA 381 89.61