# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 6.97e-30 c.56.5.6 90921 1xovA 326 1.15e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.1278 c.56.5.4,d.58.19.1 33844,39360 1iow 306 0.6121 1jq5A 370 0.8378 e.22.1.2 67084 1iowA 306 1.243 c.30.1.2,d.142.1.1 31713,41481 2q7dA 346 1.974 3bijA 285 3.078 1p5dX 463 4.150 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2hdyA 440 4.176 2irpA 208 4.707 1ad2A 228 5.683 e.24.1.1 43353 1gsa 316 6.280 2a1rA 430 6.379 2eo5A 419 7.495 1yqeA 282 7.578 c.56.7.1 123879 2i87A 364 9.99 3b2yA 275 10.46 1vhoA 346 11.04 b.49.3.1,c.56.5.4 100694,100695 1sffA 426 11.64 c.67.1.4 105482 1i7nA 309 11.83 c.30.1.5,d.142.1.3 83681,83682 1sbpA 310 11.98 c.94.1.1 35760 2iuyA 342 12.29 1nnfA 309 12.44 c.94.1.1 85903 1gsaA 316 12.52 c.30.1.3,d.142.1.1 31718,41477 1vgyA 393 12.65 c.56.5.4,d.58.19.1 100620,100621 1d3vA 323 12.82 c.42.1.1 32559 3ce9A 354 15.14 2f7lA 455 15.88 3pmgA 561 15.95 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2ov7A 137 16.24 2gh9A 386 16.61 1rrmA 386 16.95 e.22.1.2 105081 1h1yA 228 17.40 c.1.2.2 76506 2fk5A 200 17.42 1vheA 373 18.45 b.49.3.1,c.56.5.4 100669,100670 1v93A 296 18.62 c.1.23.1 100532 1y0yA 353 18.94 b.49.3.1,c.56.5.4 122514,122515 1kq3A 376 19.30 e.22.1.2 68790 1hkhA 279 19.46 c.69.1.12 90628 2q0oA 236 19.80 1u0tA 307 21.17 e.52.1.1 107567 2rb7A 364 21.27 2a0mA 316 21.29 c.42.1.1 125960 2odtX 328 22.68 1xvxA 312 22.92 c.94.1.1 116097 2j0aA 280 23.26 1eluA 390 23.79 c.67.1.3 34434 1eg5A 384 24.47 c.67.1.3 34429 1tqjA 230 25.94 c.1.2.2 107228 2opiA 212 26.59 1k0wA 231 26.63 c.74.1.1 77220 2qvbA 297 27.11 3canA 182 27.59 2p0aA 344 27.98 1tuoA 464 28.09 1jx4A 352 28.19 d.240.1.1,e.8.1.7 90378,90379 1q35A 320 29.87 c.94.1.1 95661 1xdwA 331 31.05 1dnpA 471 31.22 a.99.1.1,c.28.1.1 18775,31630 1vljA 407 34.17 e.22.1.2 108832 2aebA 322 34.29 c.42.1.1 126617 2q43A 418 34.59 c.56.5.4,d.58.19.1 139821,139822 2i6jA 161 34.96 1e4eA 343 34.97 c.30.1.2,d.142.1.1 59221,59222 1r1mA 164 35.88 d.79.7.1 96820 1nofA 383 36.23 b.71.1.2,c.1.8.3 92020,92021 2id1A 130 36.42 1uslA 170 36.58 c.121.1.1 99871 4eugA 229 37.83 c.18.1.1 31019 3cpxA 321 38.12 2o0rA 411 38.18 1m5wA 243 38.31 c.1.24.1 84836 1xc1A 309 38.49 c.94.1.1 109543 1atg 231 38.81 1h3fA 432 38.82 c.26.1.1,d.66.1.4 76631,76632 1brtA 277 39.03 c.69.1.12 34699 2e7uA 424 39.05 1y9uA 323 39.12 c.94.1.1 116594 1zp4A 304 39.12 2zadA 345 40.19 1tfuA 157 40.25 c.26.1.3 106859 1lxjA 104 41.02 d.58.48.1 84736 1wwkA 307 41.38 2r91A 286 41.50 2g76A 335 42.11 2nuwA 288 42.29 2a67A 167 42.38 1qz9A 416 42.41 c.67.1.3 96621 2cvjA 180 42.50 2pi1A 334 42.62 2z06A 252 42.92 1od6A 160 43.38 c.26.1.3 86836 2dgkA 452 44.89 1yloA 348 45.02 b.49.3.1,c.56.5.4 123659,123660 2gu2A 312 45.18 1dxy 333 45.40 2bcoA 350 45.65 c.56.5.7 128302 2pcqA 283 46.34 1wohA 305 46.61 c.42.1.1 109446 1n08A 163 47.65 b.43.5.1 79730 2bs9A 503 50.52 b.71.1.2,c.1.8.3 129062,129063 1ytvA 366 52.72 c.94.1.1 124016 1brt 277 53.80 2gzsA 278 53.90 2jejA 358 54.64 d.240.1.1,e.8.1.7 138284,138285 2cukA 311 55.08 2bkwA 385 55.30 c.67.1.3 128714 3b6iA 198 55.51 1zbfA 142 56.68 c.55.3.1 124850 1ceo 343 57.00 2fyfA 398 57.87 2gruA 368 58.06 2pe3A 354 58.21 1vecA 206 59.49 c.37.1.19 100575 1pswA 348 60.51 c.87.1.7 88287 1w3iA 293 60.71 c.1.10.1 109152 2h0aA 276 61.83 1xkyA 301 62.36 c.1.10.1 122094 3c9fA 557 63.67 1a7j 290 63.68 1anfA 370 64.04 c.94.1.1 35776 2i7vA 459 64.77 2qzuA 491 66.15 1y37A 304 67.30 3cgxA 242 67.34 2f6uA 234 67.44 c.1.4.1 133061 1ujnA 348 68.68 e.22.1.1 99460 1rd5A 262 68.73 c.1.2.4 111772 1tezA 474 68.98 a.99.1.1,c.28.1.1 112409,112410 1ivnA 190 69.50 c.23.10.5 83719 1qnaA 200 70.15 d.129.1.1,d.129.1.1 41226,41227 2atsA 292 70.23 c.1.10.1 127306 1o2dA 371 70.24 e.22.1.2 86591 1ul7A 102 71.27 d.129.6.1 99540 1bx4A 345 71.56 c.72.1.1 34935 2dtvA 397 73.15 2g4rA 160 74.09 2rdxA 379 75.29 1w24A 182 77.85 d.159.1.7 120579 2gcgA 330 78.15 2dpiA 420 78.31 d.240.1.1,e.8.1.7 131612,131613 2onsA 314 78.43 2a1fA 247 78.78 c.73.1.3 125991 1tq8A 163 79.43 c.26.2.4 107204 2iw1A 374 79.68 c.87.1.8 137738 1vi6A 208 79.87 c.23.15.1 100736 2pezA 179 81.31 2dbqA 334 81.65 1m7yA 435 82.12 c.67.1.4 78761 1wqaA 455 82.34 1hdhA 536 83.13 c.76.1.2 65805 1t3iA 420 83.26 c.67.1.3 106354 1anf 370 83.87 1mj5A 302 84.02 c.69.1.8 91285 1j4aA 333 84.09 c.2.1.4,c.23.12.1 71502,71503 1d4oA 184 84.77 c.31.1.4 31748 1yqhA 109 86.21 d.58.48.1 123886 1ukz 203 86.53 1o1xA 155 86.85 c.121.1.1 86553 1rtqA 299 87.51 c.56.5.4 97819 1jmvA 141 87.85 c.26.2.4 66897 1qtwA 285 88.69 c.1.15.1 29392 2fqxA 318 89.19 3cumA 302 89.55