# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.43e-29 c.56.5.6 90921 1xovA 326 2.72e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.09660 c.56.5.4,d.58.19.1 33844,39360 1iow 306 0.5818 1jq5A 370 0.7791 e.22.1.2 67084 1iowA 306 0.9376 c.30.1.2,d.142.1.1 31713,41481 3bijA 285 1.459 2q7dA 346 4.043 1vhoA 346 4.919 b.49.3.1,c.56.5.4 100694,100695 1gsa 316 5.254 1p5dX 463 5.746 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2a1rA 430 5.812 2hdyA 440 5.911 1yqeA 282 7.132 c.56.7.1 123879 2iuyA 342 7.145 1y0yA 353 7.992 b.49.3.1,c.56.5.4 122514,122515 2i87A 364 8.423 1vgyA 393 8.759 c.56.5.4,d.58.19.1 100620,100621 1nnfA 309 9.042 c.94.1.1 85903 1ad2A 228 10.01 e.24.1.1 43353 2eo5A 419 10.09 2rb7A 364 10.39 1d3vA 323 10.49 c.42.1.1 32559 3pmgA 561 10.50 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2irpA 208 12.20 3cpxA 321 12.62 1sbpA 310 12.84 c.94.1.1 35760 1gsaA 316 15.03 c.30.1.3,d.142.1.1 31718,41477 2ov7A 137 15.78 1vheA 373 16.11 b.49.3.1,c.56.5.4 100669,100670 3b2yA 275 16.27 1v93A 296 16.42 c.1.23.1 100532 1h1yA 228 16.82 c.1.2.2 76506 1i7nA 309 17.17 c.30.1.5,d.142.1.3 83681,83682 2a0mA 316 17.53 c.42.1.1 125960 3ce9A 354 17.87 1u0tA 307 18.08 e.52.1.1 107567 1kq3A 376 18.77 e.22.1.2 68790 1nofA 383 19.73 b.71.1.2,c.1.8.3 92020,92021 1sffA 426 20.81 c.67.1.4 105482 2cvjA 180 21.57 1rrmA 386 22.35 e.22.1.2 105081 3canA 182 22.35 1hkhA 279 23.01 c.69.1.12 90628 1dnpA 471 23.31 a.99.1.1,c.28.1.1 18775,31630 2f7lA 455 23.60 1uslA 170 23.67 c.121.1.1 99871 2fk5A 200 24.80 1tqjA 230 24.97 c.1.2.2 107228 2i6jA 161 25.36 2aebA 322 25.38 c.42.1.1 126617 1eluA 390 25.73 c.67.1.3 34434 1e4eA 343 26.90 c.30.1.2,d.142.1.1 59221,59222 1zp4A 304 27.42 2q0oA 236 27.52 2gu2A 312 27.74 2g76A 335 29.07 2odtX 328 29.28 2zadA 345 29.30 2gh9A 386 29.42 2pe3A 354 29.73 1yloA 348 29.88 b.49.3.1,c.56.5.4 123659,123660 2qvbA 297 29.90 1xvxA 312 30.31 c.94.1.1 116097 2z06A 252 31.94 2q43A 418 31.97 c.56.5.4,d.58.19.1 139821,139822 2bkwA 385 32.20 c.67.1.3 128714 1xdwA 331 33.25 2a67A 167 33.52 1ceo 343 33.55 2bs9A 503 34.32 b.71.1.2,c.1.8.3 129062,129063 1od6A 160 34.37 c.26.1.3 86836 1wwkA 307 35.15 1h3fA 432 35.78 c.26.1.1,d.66.1.4 76631,76632 1tfuA 157 36.69 c.26.1.3 106859 1eg5A 384 36.69 c.67.1.3 34429 2j0aA 280 37.27 1m5wA 243 37.49 c.1.24.1 84836 2a1fA 247 37.82 c.73.1.3 125991 1xc1A 309 39.51 c.94.1.1 109543 1tuoA 464 40.79 2bcoA 350 40.81 c.56.5.7 128302 2dgkA 452 40.85 1jx4A 352 40.87 d.240.1.1,e.8.1.7 90378,90379 2nuwA 288 40.94 1wohA 305 41.20 c.42.1.1 109446 1vljA 407 41.82 e.22.1.2 108832 4eugA 229 42.61 c.18.1.1 31019 1y9uA 323 42.80 c.94.1.1 116594 2gzsA 278 42.95 1r1mA 164 43.07 d.79.7.1 96820 1q35A 320 43.18 c.94.1.1 95661 2p0aA 344 44.15 1dxy 333 46.20 2r91A 286 46.23 2rdxA 379 46.54 2e7uA 424 46.91 1w3iA 293 47.41 c.1.10.1 109152 1ivnA 190 48.09 c.23.10.5 83719 2bneA 241 48.36 c.73.1.3 128824 1o1xA 155 49.16 c.121.1.1 86553 2h0aA 276 50.12 1brtA 277 53.15 c.69.1.12 34699 1o2dA 371 54.07 e.22.1.2 86591 1rd5A 262 54.79 c.1.2.4 111772 1i60A 278 55.88 c.1.15.4 71118 1w24A 182 56.39 d.159.1.7 120579 2pi1A 334 56.61 2o14A 375 56.92 1vecA 206 57.14 c.37.1.19 100575 2va1A 256 57.19 1tezA 474 57.33 a.99.1.1,c.28.1.1 112409,112410 2cukA 311 57.47 1lxjA 104 58.10 d.58.48.1 84736 1ukz 203 58.97 2g4rA 160 59.50 2f6uA 234 59.58 c.1.4.1 133061 1d4oA 184 60.22 c.31.1.4 31748 2pezA 179 60.85 1atg 231 61.41 2jejA 358 61.46 d.240.1.1,e.8.1.7 138284,138285 1qtwA 285 61.52 c.1.15.1 29392 1t3iA 420 61.60 c.67.1.3 106354 2pcqA 283 61.99 1jmvA 141 62.11 c.26.2.4 66897 1a7j 290 62.91 2fp3A 316 63.08 1tq8A 163 64.94 c.26.2.4 107204 1k0wA 231 65.70 c.74.1.1 77220 3b6iA 198 66.42 3cgxA 242 67.19 1xkyA 301 68.92 c.1.10.1 122094 2a5lA 200 69.78 c.23.5.8 126176 1vkfA 188 69.87 c.1.29.1 108656 1ytvA 366 69.92 c.94.1.1 124016 1zbfA 142 71.82 c.55.3.1 124850 2o0rA 411 72.57 2opiA 212 72.85 2id1A 130 73.20 2gruA 368 73.29 1oc7A 364 75.00 c.6.1.1 86794 3c9fA 557 75.06 1ybdA 239 75.80 c.73.1.3 122884 1vi6A 208 76.60 c.23.15.1 100736 1reqA 727 77.09 c.1.19.1,c.23.6.1 29620,31247 2fvgA 340 77.19 b.49.3.1,c.56.5.4 134201,134202 1brt 277 77.29 1yb0A 159 78.11 d.118.1.1 122865 2atsA 292 78.46 c.1.10.1 127306 2fyfA 398 78.62 1muwA 386 79.07 c.1.15.3 79495 1ii7A 333 80.30 d.159.1.4 62415 1lq9A 112 82.38 d.58.4.3 78129 2iw1A 374 82.41 c.87.1.8 137738 1j4aA 333 83.24 c.2.1.4,c.23.12.1 71502,71503 1pnoA 180 83.35 c.31.1.4 94953 1rtqA 299 85.07 c.56.5.4 97819 1qz9A 416 86.33 c.67.1.3 96621 2onsA 314 86.40 2qzuA 491 86.56 2pblA 262 86.78 1ujnA 348 87.23 e.22.1.1 99460 1ccwA 137 88.61 c.23.6.1 31238 1snyA 267 89.30 c.2.1.2 105833 1anfA 370 89.63 c.94.1.1 35776