# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 5.82e-30 c.56.5.6 90921 1xovA 326 1.88e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.1062 c.56.5.4,d.58.19.1 33844,39360 1iow 306 0.6067 1jq5A 370 0.8916 e.22.1.2 67084 1iowA 306 1.109 c.30.1.2,d.142.1.1 31713,41481 3bijA 285 1.639 2q7dA 346 4.665 1vhoA 346 4.872 b.49.3.1,c.56.5.4 100694,100695 2a1rA 430 4.963 2hdyA 440 5.171 2irpA 208 5.750 1gsa 316 6.036 1p5dX 463 6.434 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ad2A 228 7.360 e.24.1.1 43353 1nnfA 309 8.673 c.94.1.1 85903 1y0yA 353 8.942 b.49.3.1,c.56.5.4 122514,122515 2eo5A 419 9.063 1d3vA 323 9.226 c.42.1.1 32559 2i87A 364 9.375 1vgyA 393 9.641 c.56.5.4,d.58.19.1 100620,100621 1sbpA 310 9.860 c.94.1.1 35760 3b2yA 275 10.15 1yqeA 282 10.86 c.56.7.1 123879 3ce9A 354 10.99 2ov7A 137 11.26 3pmgA 561 11.68 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2iuyA 342 12.34 1v93A 296 12.86 c.1.23.1 100532 2rb7A 364 13.13 1gsaA 316 13.35 c.30.1.3,d.142.1.1 31718,41477 3cpxA 321 13.81 1sffA 426 14.31 c.67.1.4 105482 2fk5A 200 15.44 1vheA 373 15.97 b.49.3.1,c.56.5.4 100669,100670 1rrmA 386 18.27 e.22.1.2 105081 1i7nA 309 18.41 c.30.1.5,d.142.1.3 83681,83682 1kq3A 376 19.17 e.22.1.2 68790 2gh9A 386 19.77 1h1yA 228 21.05 c.1.2.2 76506 1uslA 170 21.45 c.121.1.1 99871 2a0mA 316 22.27 c.42.1.1 125960 1dnpA 471 22.69 a.99.1.1,c.28.1.1 18775,31630 1u0tA 307 23.04 e.52.1.1 107567 2f7lA 455 23.14 1nofA 383 23.60 b.71.1.2,c.1.8.3 92020,92021 2aebA 322 24.13 c.42.1.1 126617 1jx4A 352 24.42 d.240.1.1,e.8.1.7 90378,90379 2cvjA 180 24.55 2zadA 345 25.57 1tqjA 230 25.69 c.1.2.2 107228 1xvxA 312 25.96 c.94.1.1 116097 3canA 182 26.75 2bs9A 503 26.82 b.71.1.2,c.1.8.3 129062,129063 2qvbA 297 27.34 1eluA 390 27.54 c.67.1.3 34434 1hkhA 279 28.49 c.69.1.12 90628 1m5wA 243 29.08 c.1.24.1 84836 1zp4A 304 29.21 2q0oA 236 29.28 1xdwA 331 29.62 2bkwA 385 29.72 c.67.1.3 128714 1od6A 160 30.33 c.26.1.3 86836 1xc1A 309 31.11 c.94.1.1 109543 1h3fA 432 31.19 c.26.1.1,d.66.1.4 76631,76632 1q35A 320 31.36 c.94.1.1 95661 1k0wA 231 31.43 c.74.1.1 77220 2p0aA 344 31.67 2odtX 328 32.42 2opiA 212 33.09 2pe3A 354 33.18 1eg5A 384 33.69 c.67.1.3 34429 1tuoA 464 34.18 1r1mA 164 35.17 d.79.7.1 96820 2nuwA 288 35.47 1tfuA 157 35.51 c.26.1.3 106859 1e4eA 343 35.94 c.30.1.2,d.142.1.1 59221,59222 2r91A 286 35.96 2e7uA 424 36.52 2a67A 167 36.81 2dgkA 452 37.05 2j0aA 280 37.61 2q43A 418 37.65 c.56.5.4,d.58.19.1 139821,139822 1ceo 343 37.94 2i6jA 161 39.16 2f6uA 234 39.39 c.1.4.1 133061 2g76A 335 39.72 1vljA 407 39.80 e.22.1.2 108832 1w3iA 293 40.47 c.1.10.1 109152 1yloA 348 41.22 b.49.3.1,c.56.5.4 123659,123660 2pcqA 283 41.28 2a1fA 247 41.72 c.73.1.3 125991 1wwkA 307 42.63 1dxy 333 42.63 2z06A 252 44.00 2gu2A 312 44.00 1y9uA 323 45.37 c.94.1.1 116594 2pi1A 334 46.15 1o1xA 155 46.21 c.121.1.1 86553 1ivnA 190 46.30 c.23.10.5 83719 1wohA 305 47.31 c.42.1.1 109446 1vecA 206 48.11 c.37.1.19 100575 2jejA 358 48.90 d.240.1.1,e.8.1.7 138284,138285 2rdxA 379 50.12 2gzsA 278 50.84 2o14A 375 51.25 2fqxA 318 52.30 1o2dA 371 52.37 e.22.1.2 86591 4eugA 229 52.80 c.18.1.1 31019 1tezA 474 53.66 a.99.1.1,c.28.1.1 112409,112410 2h0aA 276 53.89 2cukA 311 55.28 1qz9A 416 56.15 c.67.1.3 96621 2bneA 241 57.21 c.73.1.3 128824 1brtA 277 58.97 c.69.1.12 34699 3b6iA 198 59.46 1lxjA 104 59.93 d.58.48.1 84736 1atg 231 60.46 1t3iA 420 60.87 c.67.1.3 106354 3cgxA 242 61.76 1jmvA 141 61.90 c.26.2.4 66897 1vi6A 208 63.35 c.23.15.1 100736 2pezA 179 63.39 1d4oA 184 64.06 c.31.1.4 31748 1i60A 278 64.78 c.1.15.4 71118 1ukz 203 65.00 2a5lA 200 66.49 c.23.5.8 126176 1xkyA 301 66.75 c.1.10.1 122094 2atsA 292 68.56 c.1.10.1 127306 1pswA 348 69.19 c.87.1.7 88287 1ytvA 366 69.53 c.94.1.1 124016 1z5hA 780 70.02 1w24A 182 70.45 d.159.1.7 120579 2bcoA 350 70.48 c.56.5.7 128302 1zbfA 142 70.83 c.55.3.1 124850 1ybdA 239 70.92 c.73.1.3 122884 1tq8A 163 71.56 c.26.2.4 107204 1rd5A 262 72.67 c.1.2.4 111772 2fyfA 398 74.13 2z00A 426 75.10 2va1A 256 75.70 1vkfA 188 76.86 c.1.29.1 108656 1ii7A 333 77.29 d.159.1.4 62415 1reqA 727 77.62 c.1.19.1,c.23.6.1 29620,31247 1a7j 290 78.67 1qtwA 285 80.93 c.1.15.1 29392 1g3qA 237 81.29 c.37.1.10 60237 2gruA 368 81.36 1brt 277 83.03 1lq9A 112 83.28 d.58.4.3 78129 1anfA 370 84.98 c.94.1.1 35776 2gcgA 330 85.27 2g4rA 160 85.86 2dpiA 420 86.23 d.240.1.1,e.8.1.7 131612,131613 2qzuA 491 86.94 1muwA 386 87.12 c.1.15.3 79495 1wqaA 455 87.13 2id1A 130 88.44 2o0rA 411 88.79 1j4aA 333 88.91 c.2.1.4,c.23.12.1 71502,71503 1y37A 304 89.36