# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 4.89e-23 c.56.5.6 90921 1xovA 326 1.58e-20 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 1.001 2g76A 335 1.085 2eklA 313 1.460 1iowA 306 1.609 c.30.1.2,d.142.1.1 31713,41481 1cg2A 393 1.631 c.56.5.4,d.58.19.1 33844,39360 1iow 306 1.737 1ycdA 243 3.127 1d3vA 323 4.014 c.42.1.1 32559 2rb7A 364 4.472 1o2dA 371 4.663 e.22.1.2 86591 1dxy 333 4.920 1wwkA 307 5.102 2cukA 311 5.365 1rrmA 386 6.690 e.22.1.2 105081 1kjnA 157 7.617 c.115.1.1 72614 1xdwA 331 7.745 3cpxA 321 9.208 2gcgA 330 9.474 2dbqA 334 9.509 3ce9A 354 9.678 2z0mA 337 9.816 1gsa 316 10.10 2i6jA 161 10.19 1sbpA 310 10.42 c.94.1.1 35760 2zadA 345 11.41 1vljA 407 12.09 e.22.1.2 108832 1sffA 426 12.20 c.67.1.4 105482 2i4iA 417 13.09 1uslA 170 13.86 c.121.1.1 99871 2pi1A 334 14.80 2eo5A 419 15.46 1j4aA 333 15.76 c.2.1.4,c.23.12.1 71502,71503 1dxyA 333 16.27 c.2.1.4,c.23.12.1 30094,31354 1atg 231 16.30 2d0iA 333 16.59 1ta9A 450 16.67 2q7dA 346 17.46 2ef5A 290 17.48 1gsaA 316 18.24 c.30.1.3,d.142.1.1 31718,41477 1vecA 206 19.13 c.37.1.19 100575 1xvxA 312 19.24 c.94.1.1 116097 1ccwA 137 20.18 c.23.6.1 31238 2pezA 179 20.30 1vgyA 393 20.74 c.56.5.4,d.58.19.1 100620,100621 1vhoA 346 20.95 b.49.3.1,c.56.5.4 100694,100695 2yxbA 161 22.41 1s6yA 450 22.70 c.2.1.5,d.162.1.2 105314,105315 2aioA 269 24.10 d.157.1.1 126829 1gdhA 320 24.11 c.2.1.4,c.23.12.1 30095,31355 1yloA 348 24.48 b.49.3.1,c.56.5.4 123659,123660 2bkwA 385 25.62 c.67.1.3 128714 2bcoA 350 25.68 c.56.5.7 128302 2i87A 364 25.80 1atgA 231 26.59 c.94.1.1 35834 2aebA 322 28.06 c.42.1.1 126617 2qs9A 194 28.74 2qvbA 297 29.18 1u0tA 307 29.96 e.52.1.1 107567 1xklA 273 31.61 c.69.1.20 115410 3berA 249 31.63 2onsA 314 31.95 1gtkA 313 32.07 c.94.1.1,d.50.2.1 76346,76347 1wcwA 261 33.08 1v93A 296 33.33 c.1.23.1 100532 2ax4A 198 34.97 1s8nA 205 35.75 c.23.1.1 105374 1y37A 304 36.17 1xc1A 309 36.19 c.94.1.1 109543 2gmnA 274 36.63 2oztA 332 38.23 1qczA 169 38.85 c.23.8.1 31276 1pnoA 180 39.98 c.31.1.4 94953 2fqxA 318 40.09 2h0aA 276 40.09 1o1xA 155 40.16 c.121.1.1 86553 1rh9A 373 40.17 c.1.8.3 118773 1kq3A 376 40.72 e.22.1.2 68790 1bn7A 294 41.25 c.69.1.8 34677 1d4oA 184 43.52 c.31.1.4 31748 1xmpA 170 43.79 c.23.8.1 115521 2psdA 318 43.98 1jq5A 370 45.30 e.22.1.2 67084 1r1dA 247 46.07 c.69.1.29 96813 1xjcA 169 46.55 c.37.1.10 115387 2gcuA 245 47.40 1c4xA 285 48.04 c.69.1.10 34684 2dpiA 420 48.46 d.240.1.1,e.8.1.7 131612,131613 1i1qB 192 48.76 c.23.16.1 61544 2o2iA 300 49.03 1nnfA 309 50.39 c.94.1.1 85903 1ceo 343 50.83 2h5yA 254 51.77 3bzwA 274 52.27 3b2yA 275 52.91 2pe3A 354 53.61 2o4cA 380 53.65 1mj5A 302 53.82 c.69.1.8 91285 1vheA 373 53.89 b.49.3.1,c.56.5.4 100669,100670 1qq9A 284 53.90 c.56.5.4 33841 1rtqA 299 54.89 c.56.5.4 97819 1brt 277 54.97 1tkjA 284 56.15 c.56.5.4 119296 3bghA 236 58.31 2ocgA 254 58.40 1uc8A 280 59.67 c.30.1.6,d.142.1.7 99165,99166 2q0oA 236 60.47 1e4eA 343 62.77 c.30.1.2,d.142.1.1 59221,59222 2oxcA 230 64.20 2rfgA 297 64.20 1hkhA 279 65.19 c.69.1.12 90628 2hqsC 118 65.23 d.79.7.1 136666 1f4pA 147 67.15 c.23.5.1 59651 1ad2A 228 67.68 e.24.1.1 43353 3bf7A 255 68.31 2fssA 365 68.97 2j6iA 364 69.41 2qryA 330 71.00 1v9cA 218 71.10 c.23.17.1 100533 1ei9A 279 72.40 c.69.1.13 34713 1lxjA 104 73.49 d.58.48.1 84736 1oaa 259 73.50 1uxoA 192 75.09 c.69.1.31 108121 2fvgA 340 75.53 b.49.3.1,c.56.5.4 134201,134202 2ffeA 311 75.59 c.143.1.1 133381 1r88A 280 75.86 c.69.1.3 97219 2ooxA 137 76.94 1oapA 109 77.83 d.79.7.1 92706 1tuoA 464 79.03 2a5lA 200 79.34 c.23.5.8 126176 1np6A 174 79.59 c.37.1.10 85954 1mdlA 359 79.74 c.1.11.2,d.54.1.1 29247,38891 2e3jA 356 79.97 1aisA 182 80.00 d.129.1.1,d.129.1.1 41288,41289 1amfA 233 80.53 c.94.1.1 35833 2yvuA 186 81.02 2i9iA 254 81.68 1qj4A 257 82.89 c.69.1.20 34796 1tfuA 157 82.98 c.26.1.3 106859 2i7vA 459 83.81 1x8hA 228 84.51 d.157.1.1 114961 1y0yA 353 86.64 b.49.3.1,c.56.5.4 122514,122515 2gh9A 386 86.82 1hl2A 297 86.88 c.1.10.1 83581 1dysA 348 87.23 c.6.1.1 30669 1u7pA 164 87.80 c.108.1.17 113095 2qruA 274 88.44 1brtA 277 88.56 c.69.1.12 34699