# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 9.77e-30 c.56.5.6 90921 1xovA 326 9.48e-26 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.3646 c.56.5.4,d.58.19.1 33844,39360 3bijA 285 0.9620 2q7dA 346 1.028 1jq5A 370 1.268 e.22.1.2 67084 1gsa 316 1.790 1iowA 306 2.977 c.30.1.2,d.142.1.1 31713,41481 1iow 306 3.345 2i6jA 161 5.033 1p5dX 463 5.203 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1i7nA 309 6.372 c.30.1.5,d.142.1.3 83681,83682 2odtX 328 6.822 1d3vA 323 8.217 c.42.1.1 32559 2irpA 208 9.379 1kq3A 376 9.516 e.22.1.2 68790 1ad2A 228 9.875 e.24.1.1 43353 1gsaA 316 10.37 c.30.1.3,d.142.1.1 31718,41477 2q0oA 236 12.20 2iuyA 342 12.56 2f7lA 455 13.51 2aebA 322 13.63 c.42.1.1 126617 2a1rA 430 13.66 1u0tA 307 15.59 e.52.1.1 107567 2i87A 364 16.16 1jx4A 352 16.33 d.240.1.1,e.8.1.7 90378,90379 2gh9A 386 16.43 1wqaA 455 18.08 2pcqA 283 18.65 1xdwA 331 18.69 2opiA 212 19.49 3b2yA 275 19.98 2eo5A 419 20.02 1k0wA 231 20.49 c.74.1.1 77220 2jejA 358 20.69 d.240.1.1,e.8.1.7 138284,138285 2a0mA 316 20.91 c.42.1.1 125960 2nuwA 288 21.25 1snyA 267 21.30 c.2.1.2 105833 1sbpA 310 22.17 c.94.1.1 35760 1sffA 426 24.03 c.67.1.4 105482 2bs9A 503 24.43 b.71.1.2,c.1.8.3 129062,129063 1hkhA 279 24.72 c.69.1.12 90628 1uslA 170 24.93 c.121.1.1 99871 1yqeA 282 25.06 c.56.7.1 123879 3pmgA 561 25.67 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2h0aA 276 25.76 3ce9A 354 26.71 1tfuA 157 27.19 c.26.1.3 106859 1od6A 160 27.20 c.26.1.3 86836 1wwkA 307 27.27 2zadA 345 29.16 2r91A 286 29.38 1dxy 333 29.81 2ov7A 137 30.08 2cukA 311 30.38 1nofA 383 30.68 b.71.1.2,c.1.8.3 92020,92021 2g76A 335 31.14 1xvxA 312 31.38 c.94.1.1 116097 2fk5A 200 32.21 2hdyA 440 32.78 2rfgA 297 33.16 1vgyA 393 33.49 c.56.5.4,d.58.19.1 100620,100621 1v93A 296 33.72 c.1.23.1 100532 1lxjA 104 33.83 d.58.48.1 84736 1jmvA 141 34.29 c.26.2.4 66897 1rrmA 386 34.76 e.22.1.2 105081 2fp3A 316 35.47 1g3qA 237 36.15 c.37.1.10 60237 1w3iA 293 36.75 c.1.10.1 109152 2rb7A 364 36.81 1y0yA 353 36.92 b.49.3.1,c.56.5.4 122514,122515 1wjgA 137 37.39 c.26.2.4 114696 2qvbA 297 37.49 1vhoA 346 37.70 b.49.3.1,c.56.5.4 100694,100695 2e7uA 424 38.17 3cpxA 321 39.67 2cvjA 180 40.14 2ehhA 294 40.16 1muwA 386 40.54 c.1.15.3 79495 1zp4A 304 41.01 1atg 231 41.04 1o2dA 371 41.96 e.22.1.2 86591 1tq8A 163 42.37 c.26.2.4 107204 2dbqA 334 43.38 1wohA 305 43.87 c.42.1.1 109446 2z00A 426 44.03 1j4aA 333 45.19 c.2.1.4,c.23.12.1 71502,71503 1nnfA 309 45.32 c.94.1.1 85903 1tqjA 230 46.36 c.1.2.2 107228 1tuoA 464 46.52 1w24A 182 47.22 d.159.1.7 120579 1hl2A 297 47.47 c.1.10.1 83581 1xkyA 301 47.69 c.1.10.1 122094 2pi1A 334 48.60 1xc1A 309 49.56 c.94.1.1 109543 1bx4A 345 50.71 c.72.1.1 34935 2j0aA 280 50.79 2pezA 179 51.14 1anfA 370 52.28 c.94.1.1 35776 2p0aA 344 52.60 1pswA 348 53.66 c.87.1.7 88287 1vflA 356 56.15 c.1.9.1 120041 1mrzA 293 57.14 b.43.5.1,c.26.1.3 91452,91453 2pfsA 150 57.17 2g4rA 160 57.51 1y9uA 323 58.58 c.94.1.1 116594 2bkwA 385 58.95 c.67.1.3 128714 1y37A 304 59.47 1eluA 390 59.51 c.67.1.3 34434 1d4oA 184 59.78 c.31.1.4 31748 1vljA 407 59.89 e.22.1.2 108832 1q35A 320 60.63 c.94.1.1 95661 1anf 370 60.66 1ccwA 137 62.91 c.23.6.1 31238 1ceo 343 63.85 2z0mA 337 64.97 1reqA 727 65.57 c.1.19.1,c.23.6.1 29620,31247 2onsA 314 66.41 1yb0A 159 68.14 d.118.1.1 122865 2dpiA 420 69.05 d.240.1.1,e.8.1.7 131612,131613 2vlbA 251 69.99 2fqxA 318 72.55 1kjnA 157 73.22 c.115.1.1 72614 1ytvA 366 73.99 c.94.1.1 124016 2ppwA 216 74.09 1h1yA 228 75.61 c.1.2.2 76506 1vheA 373 76.27 b.49.3.1,c.56.5.4 100669,100670 1jl2A 156 77.88 c.55.3.1 66822 2o3aA 178 78.43 1r1mA 164 79.17 d.79.7.1 96820 1qnaA 200 79.41 d.129.1.1,d.129.1.1 41226,41227 2gcgA 330 80.30 3c9hA 355 81.46 1qtwA 285 82.03 c.1.15.1 29392 1gdhA 320 82.10 c.2.1.4,c.23.12.1 30095,31355 1ionA 243 82.90 c.37.1.10 62633 3ca8A 266 83.53 1gq6A 313 83.75 c.42.1.1 70341 1h3fA 432 84.23 c.26.1.1,d.66.1.4 76631,76632 2qq5A 260 84.58 1wcv1 257 86.63 1nmsA 249 87.12 c.17.1.1 85879 2o14A 375 88.46 1xjcA 169 88.50 c.37.1.10 115387 1pvtA 238 89.22 c.74.1.1 95189 1yloA 348 89.35 b.49.3.1,c.56.5.4 123659,123660 1qjcA 158 89.41 c.26.1.3 63328 2e9yA 316 89.91