# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.37e-23 c.56.5.6 90921 1xovA 326 2.34e-20 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.1828 2z00A 426 1.878 2iuyA 342 2.974 2q7dA 346 2.984 2odtX 328 3.837 1gsa 316 3.962 1cg2A 393 4.713 c.56.5.4,d.58.19.1 33844,39360 1iow 306 4.830 1jx4A 352 5.350 d.240.1.1,e.8.1.7 90378,90379 3cpxA 321 5.790 1cs0A 1073 7.640 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2bs9A 503 7.958 b.71.1.2,c.1.8.3 129062,129063 1k0wA 231 9.492 c.74.1.1 77220 1qw9A 502 9.661 b.71.1.2,c.1.8.3 96466,96467 1p1mA 406 11.78 b.92.1.4,c.1.9.9 87696,87697 2bkwA 385 11.80 c.67.1.3 128714 3bh1A 507 12.90 1fobA 334 13.21 c.1.8.3 83255 1sw2A 275 13.72 c.94.1.1 106064 1ta9A 450 14.39 2fp3A 316 14.65 1wohA 305 15.86 c.42.1.1 109446 1iowA 306 16.45 c.30.1.2,d.142.1.1 31713,41481 1muwA 386 16.56 c.1.15.3 79495 2fk5A 200 17.21 2gu2A 312 17.68 1eg5A 384 17.74 c.67.1.3 34429 2pgeA 377 18.17 3pmgA 561 18.28 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2i9iA 254 19.23 2pcqA 283 20.16 1y0yA 353 20.63 b.49.3.1,c.56.5.4 122514,122515 2fp4B 395 22.37 c.23.4.1,d.142.1.4 133897,133898 2i6jA 161 24.42 2fyfA 398 24.94 3c9fA 557 24.98 1d3vA 323 26.29 c.42.1.1 32559 2f6uA 234 26.75 c.1.4.1 133061 2i87A 364 26.79 4ubpC 570 27.35 b.92.1.1,c.1.9.2 28431,29053 1kdgA 546 28.81 c.3.1.2,d.16.1.1 77337,77338 2h0aA 276 30.20 2aebA 322 30.60 c.42.1.1 126617 2absA 383 31.42 c.72.1.1 126534 2vlbA 251 32.07 1o12A 376 32.22 b.92.1.5,c.1.9.10 80758,80759 1gsaA 316 33.76 c.30.1.3,d.142.1.1 31718,41477 1auk 489 33.88 1jq5A 370 34.38 e.22.1.2 67084 1yloA 348 35.31 b.49.3.1,c.56.5.4 123659,123660 2eb0A 307 35.72 1tuoA 464 36.45 1qwgA 251 38.17 c.1.27.1 96473 1snyA 267 38.83 c.2.1.2 105833 2qvbA 297 39.55 3ce9A 354 39.71 2dr3A 247 41.83 1x7yA 400 42.14 c.36.1.11 114944 1kq3A 376 42.22 e.22.1.2 68790 1xc1A 309 42.38 c.94.1.1 109543 2i5gA 325 43.43 1nofA 383 45.33 b.71.1.2,c.1.8.3 92020,92021 1kwmA 402 45.80 c.56.5.1,d.58.3.1 73079,73080 1qnrA 344 46.05 c.1.8.3 28834 1f07A 321 48.15 c.1.16.3 59560 2f7lA 455 53.35 1lucB 324 53.41 c.1.16.1 29548 1g38A 393 53.58 c.66.1.27,d.287.1.1 111567,111568 2ef5A 290 54.37 2gagA 965 56.94 1gq6A 313 57.27 c.42.1.1 70341 2irpA 208 57.44 2z7bA 270 57.51 1v93A 296 57.61 c.1.23.1 100532 2jfnA 285 58.27 2gcuA 245 58.31 2ow6A 1045 58.57 2gh9A 386 58.71 2olnA 397 59.61 2g76A 335 60.57 1hkhA 279 64.01 c.69.1.12 90628 2e3jA 356 64.15 1rqbA 539 64.51 a.5.7.2,c.1.10.5 105057,105058 2bcoA 350 65.28 c.56.5.7 128302 2v26A 784 65.62 1u0tA 307 66.00 e.52.1.1 107567 1yp2A 451 67.17 b.81.1.4,c.68.1.6 123798,123799 1a99A 344 67.55 c.94.1.1 35812 3cniA 156 68.00 1i7nA 309 68.10 c.30.1.5,d.142.1.3 83681,83682 1p5dX 463 68.29 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nrwA 288 70.35 c.108.1.10 86128 2gphA 364 70.49 1i0dA 332 70.69 c.1.9.3 61487 1od6A 160 70.70 c.26.1.3 86836 1byi 224 71.85 1ni4A 365 72.82 c.36.1.11 85728 2puzA 419 72.99 1vhoA 346 73.74 b.49.3.1,c.56.5.4 100694,100695 1geqA 248 75.08 c.1.2.4 28589 1fc4A 401 76.21 c.67.1.4 59760 2yxtA 312 76.46 1g3qA 237 77.42 c.37.1.10 60237 2pi1A 334 78.25 1lsuA 147 78.82 c.2.1.9 74250 1tfuA 157 80.18 c.26.1.3 106859 1qtwA 285 81.15 c.1.15.1 29392 1h1yA 228 81.33 c.1.2.2 76506 1hdhA 536 82.70 c.76.1.2 65805 1jmvA 141 83.16 c.26.2.4 66897 2vbfA 570 83.65 2aq4A 434 84.11 1vprA 374 84.12 b.60.1.7 120066 2dr1A 386 84.92 3ca8A 266 85.20 2fqxA 318 86.16 1anfA 370 86.20 c.94.1.1 35776 1uslA 170 86.97 c.121.1.1 99871 2pqpA 421 87.07 1ydgA 211 88.65 c.23.5.8 116614 1oywA 523 88.99 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2ddhA 661 89.44 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 2o3aA 178 89.97