# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.88e-29 c.56.5.6 90921 1xovA 326 2.45e-25 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.2373 c.56.5.4,d.58.19.1 33844,39360 3bijA 285 0.6836 1gsa 316 0.8239 2q7dA 346 1.062 1iow 306 1.570 1jq5A 370 1.799 e.22.1.2 67084 1iowA 306 1.876 c.30.1.2,d.142.1.1 31713,41481 1i7nA 309 4.813 c.30.1.5,d.142.1.3 83681,83682 2odtX 328 7.163 2i6jA 161 7.659 1p5dX 463 10.06 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1gsaA 316 10.76 c.30.1.3,d.142.1.1 31718,41477 1sbpA 310 11.70 c.94.1.1 35760 1d3vA 323 12.26 c.42.1.1 32559 2iuyA 342 12.45 1kq3A 376 13.30 e.22.1.2 68790 2i87A 364 13.54 1vgyA 393 13.84 c.56.5.4,d.58.19.1 100620,100621 3cpxA 321 14.39 1vhoA 346 14.71 b.49.3.1,c.56.5.4 100694,100695 1ad2A 228 15.57 e.24.1.1 43353 2a1rA 430 16.38 2gh9A 386 16.67 2f7lA 455 19.03 2rb7A 364 19.60 2eo5A 419 19.99 1jx4A 352 20.03 d.240.1.1,e.8.1.7 90378,90379 2irpA 208 20.24 1u0tA 307 21.36 e.52.1.1 107567 2aebA 322 21.46 c.42.1.1 126617 1xvxA 312 21.57 c.94.1.1 116097 1y0yA 353 21.73 b.49.3.1,c.56.5.4 122514,122515 2zadA 345 22.49 1xdwA 331 22.69 1nnfA 309 22.81 c.94.1.1 85903 3b2yA 275 22.92 1uslA 170 23.08 c.121.1.1 99871 1yqeA 282 23.11 c.56.7.1 123879 2q0oA 236 23.20 3ce9A 354 23.41 1k0wA 231 24.60 c.74.1.1 77220 1nofA 383 25.37 b.71.1.2,c.1.8.3 92020,92021 2h0aA 276 25.76 2pcqA 283 25.94 2fp3A 316 26.50 2jejA 358 26.53 d.240.1.1,e.8.1.7 138284,138285 1sffA 426 27.30 c.67.1.4 105482 1xc1A 309 27.38 c.94.1.1 109543 2a0mA 316 28.01 c.42.1.1 125960 1od6A 160 28.21 c.26.1.3 86836 2fk5A 200 28.77 2nuwA 288 29.15 1wqaA 455 30.82 1tfuA 157 31.37 c.26.1.3 106859 1wwkA 307 31.41 1dxy 333 31.78 1atg 231 32.62 1jmvA 141 33.07 c.26.2.4 66897 2opiA 212 36.91 2rfgA 297 37.10 1q35A 320 38.39 c.94.1.1 95661 1rrmA 386 39.87 e.22.1.2 105081 1hkhA 279 41.12 c.69.1.12 90628 2bs9A 503 41.49 b.71.1.2,c.1.8.3 129062,129063 2pezA 179 41.55 1h1yA 228 41.72 c.1.2.2 76506 1zp4A 304 43.06 2r91A 286 43.21 2o3aA 178 43.25 1tqjA 230 43.26 c.1.2.2 107228 2cukA 311 43.59 3pmgA 561 44.02 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1anfA 370 44.06 c.94.1.1 35776 1wjgA 137 44.54 c.26.2.4 114696 2hdyA 440 44.56 1g3qA 237 44.66 c.37.1.10 60237 2ehhA 294 45.00 1muwA 386 45.34 c.1.15.3 79495 2gzsA 278 45.46 2g76A 335 45.56 1df7A 159 46.11 c.71.1.1 34885 2qvbA 297 46.15 1wohA 305 46.35 c.42.1.1 109446 2cvjA 180 49.02 1snyA 267 49.82 c.2.1.2 105833 1ccwA 137 49.83 c.23.6.1 31238 1qtwA 285 50.26 c.1.15.1 29392 1o2dA 371 50.43 e.22.1.2 86591 2z0mA 337 50.75 2pi1A 334 51.27 2ov7A 137 51.85 1yloA 348 52.11 b.49.3.1,c.56.5.4 123659,123660 1y9uA 323 52.32 c.94.1.1 116594 1v93A 296 52.97 c.1.23.1 100532 2dbqA 334 53.54 1j4aA 333 53.65 c.2.1.4,c.23.12.1 71502,71503 1lxjA 104 54.42 d.58.48.1 84736 2bkwA 385 54.51 c.67.1.3 128714 1e4eA 343 55.12 c.30.1.2,d.142.1.1 59221,59222 2pfsA 150 55.12 1anf 370 55.36 2j0aA 280 56.22 1w3iA 293 56.27 c.1.10.1 109152 2g4rA 160 57.17 2onsA 314 59.63 1dnpA 471 60.57 a.99.1.1,c.28.1.1 18775,31630 1hl2A 297 63.11 c.1.10.1 83581 2vlbA 251 63.70 2p0aA 344 63.83 1d4oA 184 64.77 c.31.1.4 31748 1tq8A 163 65.63 c.26.2.4 107204 1w24A 182 66.07 d.159.1.7 120579 1vheA 373 66.24 b.49.3.1,c.56.5.4 100669,100670 2o14A 375 66.37 1ii7A 333 67.41 d.159.1.4 62415 4eugA 229 71.78 c.18.1.1 31019 1vflA 356 71.99 c.1.9.1 120041 1bx4A 345 72.59 c.72.1.1 34935 2e9yA 316 72.66 1pvtA 238 73.02 c.74.1.1 95189 3c9hA 355 73.57 2qryA 330 73.67 1h3fA 432 74.23 c.26.1.1,d.66.1.4 76631,76632 1xkyA 301 74.82 c.1.10.1 122094 1ceo 343 75.80 1i60A 278 77.20 c.1.15.4 71118 1vljA 407 77.23 e.22.1.2 108832 1atgA 231 77.88 c.94.1.1 35834 1cozA 129 78.11 c.26.1.2 31598 1kjnA 157 79.25 c.115.1.1 72614 1ivnA 190 80.29 c.23.10.5 83719 1ytvA 366 80.34 c.94.1.1 124016 1vecA 206 80.72 c.37.1.19 100575 1xjcA 169 81.10 c.37.1.10 115387 2pblA 262 81.31 1wcv1 257 81.96 2pt2A 334 82.25 1f07A 321 82.34 c.1.16.3 59560 1miwA 404 82.45 a.173.1.1,d.218.1.4 79162,79163 1yqhA 109 83.31 d.58.48.1 123886 1meoA 209 83.58 c.65.1.1 79035 1aj2A 282 83.67 c.1.21.1 29665 1nmsA 249 83.90 c.17.1.1 85879 2ppwA 216 84.19 1t3iA 420 84.51 c.67.1.3 106354 1auk 489 84.52 2eayA 233 84.94 2d0iA 333 85.86 2fqxA 318 85.95 3canA 182 86.69 2gcgA 330 87.52