# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 9.64e-28 c.56.5.6 90921 1xovA 326 2.87e-24 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 1.205 c.56.5.4,d.58.19.1 33844,39360 1iow 306 1.565 3bijA 285 1.646 2a1rA 430 1.868 2q7dA 346 1.901 1jq5A 370 2.053 e.22.1.2 67084 1iowA 306 3.743 c.30.1.2,d.142.1.1 31713,41481 2odtX 328 4.223 3ce9A 354 4.718 1sbpA 310 5.809 c.94.1.1 35760 1gsa 316 5.831 2i6jA 161 6.750 1kq3A 376 8.122 e.22.1.2 68790 1jx4A 352 9.196 d.240.1.1,e.8.1.7 90378,90379 2irpA 208 9.249 1tfuA 157 11.86 c.26.1.3 106859 2i87A 364 12.06 2jejA 358 12.81 d.240.1.1,e.8.1.7 138284,138285 1k0wA 231 13.14 c.74.1.1 77220 2pcqA 283 16.15 1i7nA 309 16.72 c.30.1.5,d.142.1.3 83681,83682 3b2yA 275 16.81 1rrmA 386 16.86 e.22.1.2 105081 1o2dA 371 16.87 e.22.1.2 86591 1nofA 383 16.89 b.71.1.2,c.1.8.3 92020,92021 1xvxA 312 17.08 c.94.1.1 116097 1od6A 160 17.28 c.26.1.3 86836 1vhoA 346 18.10 b.49.3.1,c.56.5.4 100694,100695 2hdyA 440 19.90 2ov7A 137 20.55 2e7uA 424 20.72 2fk5A 200 21.05 1sffA 426 21.92 c.67.1.4 105482 1y0yA 353 22.55 b.49.3.1,c.56.5.4 122514,122515 2nuwA 288 22.95 1gsaA 316 23.41 c.30.1.3,d.142.1.1 31718,41477 3cgxA 242 25.62 2f4qA 346 26.44 1p5dX 463 26.97 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2eklA 313 27.01 1ad2A 228 27.25 e.24.1.1 43353 2p0aA 344 27.96 1xc1A 309 28.21 c.94.1.1 109543 2fp3A 316 30.45 2h0aA 276 31.46 1df7A 159 31.72 c.71.1.1 34885 1u0tA 307 31.88 e.52.1.1 107567 2gh9A 386 32.18 2z00A 426 33.79 1atg 231 35.05 2zadA 345 35.68 1d3vA 323 35.87 c.42.1.1 32559 2r91A 286 36.43 2opiA 212 36.89 1tqjA 230 36.89 c.1.2.2 107228 1ta9A 450 36.91 1zp4A 304 37.37 2iuyA 342 37.39 1dnpA 471 37.46 a.99.1.1,c.28.1.1 18775,31630 2bkwA 385 38.10 c.67.1.3 128714 1y9uA 323 38.22 c.94.1.1 116594 2cvjA 180 38.78 1xdwA 331 40.31 1nnfA 309 40.59 c.94.1.1 85903 2q0oA 236 41.10 2ehhA 294 41.15 2o0rA 411 41.54 2bs9A 503 42.13 b.71.1.2,c.1.8.3 129062,129063 2rfgA 297 42.13 1v93A 296 42.72 c.1.23.1 100532 2j0aA 280 44.29 1q35A 320 44.48 c.94.1.1 95661 1vljA 407 44.68 e.22.1.2 108832 3cpxA 321 45.43 2eo5A 419 46.70 3pmgA 561 50.33 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1w24A 182 50.74 d.159.1.7 120579 1yqeA 282 51.70 c.56.7.1 123879 2pvpA 367 52.73 1w3iA 293 53.03 c.1.10.1 109152 1ii7A 333 53.13 d.159.1.4 62415 1uslA 170 53.79 c.121.1.1 99871 1lxjA 104 53.82 d.58.48.1 84736 2f6uA 234 54.41 c.1.4.1 133061 1h3fA 432 55.26 c.26.1.1,d.66.1.4 76631,76632 2pt2A 334 56.39 2gu2A 312 56.43 1h1yA 228 57.49 c.1.2.2 76506 1snyA 267 57.72 c.2.1.2 105833 2ojpA 292 59.03 1y4tA 322 59.44 c.94.1.1 116464 2aq4A 434 59.61 1dxy 333 60.41 1yloA 348 61.50 b.49.3.1,c.56.5.4 123659,123660 2pe3A 354 61.92 2qcuA 501 63.12 1f9aA 168 63.44 c.26.1.3 31602 1e4eA 343 63.93 c.30.1.2,d.142.1.1 59221,59222 1vheA 373 64.06 b.49.3.1,c.56.5.4 100669,100670 2dpiA 420 64.24 d.240.1.1,e.8.1.7 131612,131613 1miwA 404 64.39 a.173.1.1,d.218.1.4 79162,79163 1hkhA 279 64.91 c.69.1.12 90628 2qryA 330 66.35 1reqA 727 67.21 c.1.19.1,c.23.6.1 29620,31247 2qvbA 297 67.30 3choA 610 68.18 2onsA 314 68.85 1nb9A 147 72.53 b.43.5.1 85515 2g4rA 160 74.81 2g76A 335 75.79 4eugA 229 76.00 c.18.1.1 31019 1ceo 343 76.08 1z5hA 780 76.13 1anfA 370 76.13 c.94.1.1 35776 2cukA 311 76.80 2aebA 322 77.57 c.42.1.1 126617 1sbp 310 79.16 1brtA 277 79.58 c.69.1.12 34699 1n08A 163 81.54 b.43.5.1 79730 2atsA 292 83.03 c.1.10.1 127306 1eg5A 384 84.55 c.67.1.3 34429 2vlbA 251 84.56 1qjcA 158 84.65 c.26.1.3 63328 1tzzA 392 84.73 c.1.11.2,d.54.1.1 112896,112897 1atgA 231 85.00 c.94.1.1 35834