# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.57e-28 c.56.5.6 90921 1xovA 326 6.04e-25 b.34.11.4,c.56.5.6 122206,122207 1iow 306 0.7120 2q7dA 346 0.8025 1cg2A 393 0.9286 c.56.5.4,d.58.19.1 33844,39360 3bijA 285 1.014 1iowA 306 1.180 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 2.242 e.22.1.2 67084 1gsa 316 2.568 3ce9A 354 3.365 1sbpA 310 4.074 c.94.1.1 35760 2a1rA 430 4.956 2i6jA 161 6.834 1gsaA 316 8.171 c.30.1.3,d.142.1.1 31718,41477 1xc1A 309 9.884 c.94.1.1 109543 1kq3A 376 9.923 e.22.1.2 68790 1rrmA 386 10.97 e.22.1.2 105081 2eklA 313 11.16 1xdwA 331 11.72 1nnfA 309 12.17 c.94.1.1 85903 2jejA 358 12.61 d.240.1.1,e.8.1.7 138284,138285 1jx4A 352 12.61 d.240.1.1,e.8.1.7 90378,90379 2odtX 328 13.30 1xvxA 312 14.52 c.94.1.1 116097 1q35A 320 14.59 c.94.1.1 95661 1dxy 333 15.52 1ad2A 228 15.62 e.24.1.1 43353 1u0tA 307 15.80 e.52.1.1 107567 2gh9A 386 16.04 1i7nA 309 18.63 c.30.1.5,d.142.1.3 83681,83682 2i87A 364 19.39 2pcqA 283 21.08 2ov7A 137 23.04 2q0oA 236 23.35 1y4tA 322 23.47 c.94.1.1 116464 1dnpA 471 24.12 a.99.1.1,c.28.1.1 18775,31630 1vheA 373 24.38 b.49.3.1,c.56.5.4 100669,100670 1p5dX 463 24.90 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2pt2A 334 25.59 1yloA 348 25.90 b.49.3.1,c.56.5.4 123659,123660 2hdyA 440 26.00 1xjcA 169 26.92 c.37.1.10 115387 1vljA 407 29.25 e.22.1.2 108832 1vhoA 346 29.77 b.49.3.1,c.56.5.4 100694,100695 2rfgA 297 29.87 2nuwA 288 29.95 1tfuA 157 29.98 c.26.1.3 106859 2e7uA 424 30.13 1o2dA 371 30.80 e.22.1.2 86591 2bkwA 385 31.39 c.67.1.3 128714 2irpA 208 31.75 3pmgA 561 32.35 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2fp3A 316 32.38 1ytvA 366 32.63 c.94.1.1 124016 2r91A 286 32.85 1y0yA 353 33.99 b.49.3.1,c.56.5.4 122514,122515 1y9uA 323 33.99 c.94.1.1 116594 1od6A 160 34.48 c.26.1.3 86836 1anfA 370 34.99 c.94.1.1 35776 1ta9A 450 35.41 1atg 231 35.52 1hkhA 279 35.62 c.69.1.12 90628 2p0aA 344 35.81 2cukA 311 37.06 2cvjA 180 37.08 2fk5A 200 37.42 2j0aA 280 37.49 1k0wA 231 38.37 c.74.1.1 77220 2dpiA 420 38.80 d.240.1.1,e.8.1.7 131612,131613 2f4qA 346 39.36 1lxjA 104 42.68 d.58.48.1 84736 1v93A 296 43.50 c.1.23.1 100532 2ehhA 294 45.11 2z0mA 337 45.56 2g76A 335 46.20 3b2yA 275 46.31 1vecA 206 47.12 c.37.1.19 100575 1uslA 170 49.26 c.121.1.1 99871 1xkyA 301 50.12 c.1.10.1 122094 1anf 370 52.21 1z5hA 780 52.99 2eo5A 419 53.31 1qnaA 200 53.52 d.129.1.1,d.129.1.1 41226,41227 1nofA 383 54.12 b.71.1.2,c.1.8.3 92020,92021 2iuyA 342 54.27 2f7lA 455 54.96 1miwA 404 56.54 a.173.1.1,d.218.1.4 79162,79163 2atsA 292 57.51 c.1.10.1 127306 1hl2A 297 58.06 c.1.10.1 83581 1w3iA 293 58.16 c.1.10.1 109152 2zadA 345 59.69 3canA 182 60.12 2pezA 179 60.14 1amfA 233 60.68 c.94.1.1 35833 1wwkA 307 60.88 1sffA 426 61.06 c.67.1.4 105482 1zp4A 304 61.24 2qvbA 297 63.04 3cpxA 321 65.27 1a7j 290 67.58 1li4A 432 68.08 c.2.1.4,c.23.12.3 84616,84617 4eugA 229 69.13 c.18.1.1 31019 2rb7A 364 71.01 2gcuA 245 71.06 1atgA 231 72.24 c.94.1.1 35834 2g4rA 160 72.91 1vgyA 393 74.15 c.56.5.4,d.58.19.1 100620,100621 2a0mA 316 74.24 c.42.1.1 125960 2z00A 426 74.56 1tq8A 163 74.93 c.26.2.4 107204 2gcgA 330 77.88 2ojpA 292 78.42 2pg9A 337 79.50 1brtA 277 81.36 c.69.1.12 34699 2cp8A 54 81.76 a.5.2.1 130695 2onsA 314 81.96 1j4aA 333 82.56 c.2.1.4,c.23.12.1 71502,71503 2d0iA 333 82.78 1t5iA 172 83.34 c.37.1.19 106450 2hmcA 344 83.98 2ew8A 249 84.71 c.2.1.2 132447 2pi1A 334 85.64 2q43A 418 86.05 c.56.5.4,d.58.19.1 139821,139822 1d4oA 184 87.73 c.31.1.4 31748 2qzuA 491 87.86 1d3vA 323 88.38 c.42.1.1 32559 2h0aA 276 89.80