# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.56e-29 c.56.5.6 90921 1xovA 326 1.09e-25 b.34.11.4,c.56.5.6 122206,122207 1cg2A 393 0.3455 c.56.5.4,d.58.19.1 33844,39360 1iow 306 0.9234 3bijA 285 1.358 1iowA 306 1.515 c.30.1.2,d.142.1.1 31713,41481 2a1rA 430 1.623 2q7dA 346 1.965 1gsa 316 3.301 1nnfA 309 3.709 c.94.1.1 85903 1jq5A 370 3.915 e.22.1.2 67084 1sbpA 310 4.323 c.94.1.1 35760 2i6jA 161 4.794 1xvxA 312 7.277 c.94.1.1 116097 1xc1A 309 9.111 c.94.1.1 109543 2eklA 313 9.427 3ce9A 354 9.716 1jx4A 352 11.52 d.240.1.1,e.8.1.7 90378,90379 1ad2A 228 11.60 e.24.1.1 43353 1gsaA 316 11.91 c.30.1.3,d.142.1.1 31718,41477 2hdyA 440 11.96 1q35A 320 13.30 c.94.1.1 95661 1p5dX 463 13.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2odtX 328 13.82 2jejA 358 14.06 d.240.1.1,e.8.1.7 138284,138285 1rrmA 386 14.40 e.22.1.2 105081 2bkwA 385 15.28 c.67.1.3 128714 1kq3A 376 15.70 e.22.1.2 68790 1i7nA 309 16.31 c.30.1.5,d.142.1.3 83681,83682 2irpA 208 18.14 2i87A 364 19.19 1tfuA 157 19.21 c.26.1.3 106859 2pcqA 283 19.30 2gh9A 386 19.31 1od6A 160 19.92 c.26.1.3 86836 2fp3A 316 20.29 2fk5A 200 20.89 1xdwA 331 22.02 2dpiA 420 22.40 d.240.1.1,e.8.1.7 131612,131613 1dnpA 471 22.43 a.99.1.1,c.28.1.1 18775,31630 1vhoA 346 22.65 b.49.3.1,c.56.5.4 100694,100695 1atg 231 23.12 1zp4A 304 23.12 2nuwA 288 23.22 1v93A 296 23.65 c.1.23.1 100532 2p0aA 344 24.02 1d3vA 323 24.60 c.42.1.1 32559 1hkhA 279 24.80 c.69.1.12 90628 1u0tA 307 24.84 e.52.1.1 107567 1dxy 333 25.21 2ov7A 137 25.46 1o2dA 371 25.46 e.22.1.2 86591 2f4qA 346 26.17 2h0aA 276 26.34 2cvjA 180 27.06 1uslA 170 27.06 c.121.1.1 99871 2rfgA 297 27.77 1k0wA 231 28.76 c.74.1.1 77220 3b2yA 275 28.78 2bs9A 503 31.58 b.71.1.2,c.1.8.3 129062,129063 1lxjA 104 32.11 d.58.48.1 84736 3pmgA 561 32.81 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2pt2A 334 32.84 2g76A 335 35.04 2cukA 311 36.29 2iuyA 342 36.31 2rb7A 364 37.78 1yqeA 282 37.87 c.56.7.1 123879 2f7lA 455 38.31 1xjcA 169 39.73 c.37.1.10 115387 1df7A 159 40.29 c.71.1.1 34885 2eo5A 419 40.58 1h1yA 228 40.58 c.1.2.2 76506 2r91A 286 40.81 2q43A 418 42.90 c.56.5.4,d.58.19.1 139821,139822 1tqjA 230 43.10 c.1.2.2 107228 1sffA 426 43.40 c.67.1.4 105482 1y4tA 322 43.69 c.94.1.1 116464 2q0oA 236 44.10 1miwA 404 44.47 a.173.1.1,d.218.1.4 79162,79163 1eg5A 384 44.91 c.67.1.3 34429 1y9uA 323 44.99 c.94.1.1 116594 2atsA 292 45.87 c.1.10.1 127306 1wwkA 307 46.08 1t3iA 420 46.78 c.67.1.3 106354 2z00A 426 46.94 2ojpA 292 47.73 1ytvA 366 47.89 c.94.1.1 124016 1vheA 373 48.21 b.49.3.1,c.56.5.4 100669,100670 1vljA 407 48.58 e.22.1.2 108832 2aebA 322 48.71 c.42.1.1 126617 2a0mA 316 48.74 c.42.1.1 125960 2opiA 212 49.63 1h3fA 432 49.75 c.26.1.1,d.66.1.4 76631,76632 2qryA 330 49.90 1yloA 348 50.76 b.49.3.1,c.56.5.4 123659,123660 2qvbA 297 51.06 2ehhA 294 51.87 2e7uA 424 52.71 1ceo 343 53.06 1y0yA 353 53.12 b.49.3.1,c.56.5.4 122514,122515 2aq4A 434 53.75 1nofA 383 53.99 b.71.1.2,c.1.8.3 92020,92021 1a7j 290 55.00 1w3iA 293 55.96 c.1.10.1 109152 2d0iA 333 56.27 1brtA 277 56.63 c.69.1.12 34699 1t6cA 315 58.19 c.55.1.8,c.55.1.8 106558,106559 3canA 182 58.65 1atgA 231 58.87 c.94.1.1 35834 1vgyA 393 59.22 c.56.5.4,d.58.19.1 100620,100621 2pi1A 334 59.22 2gcgA 330 59.39 1hl2A 297 59.43 c.1.10.1 83581 1z5hA 780 60.11 1reqA 727 61.85 c.1.19.1,c.23.6.1 29620,31247 1ii7A 333 63.26 d.159.1.4 62415 1r1mA 164 64.80 d.79.7.1 96820 1j4aA 333 65.61 c.2.1.4,c.23.12.1 71502,71503 1ta9A 450 66.81 2pbqA 178 67.11 1xkyA 301 67.40 c.1.10.1 122094 1anfA 370 67.43 c.94.1.1 35776 1vecA 206 67.54 c.37.1.19 100575 2hmcA 344 68.41 1d4oA 184 68.73 c.31.1.4 31748 2j0aA 280 69.36 1xfkA 336 69.94 c.42.1.1 115264 2dbqA 334 70.48 1snyA 267 70.54 c.2.1.2 105833 2ppwA 216 72.41 2pezA 179 73.51 1wohA 305 74.57 c.42.1.1 109446 2dr3A 247 75.22 3cpxA 321 76.03 1e4eA 343 76.21 c.30.1.2,d.142.1.1 59221,59222 2onsA 314 76.53 1pvtA 238 77.18 c.74.1.1 95189 1a8qA 274 78.70 c.69.1.12 34702 1ivnA 190 80.23 c.23.10.5 83719 2pg9A 337 81.01 2f6uA 234 81.39 c.1.4.1 133061 2j6iA 364 81.76 4eugA 229 81.96 c.18.1.1 31019 2fssA 365 82.15 1eluA 390 83.12 c.67.1.3 34434 3cetA 334 83.22 1qnaA 200 83.51 d.129.1.1,d.129.1.1 41226,41227 2bwnA 401 85.42 c.67.1.4 129368 1rd5A 262 85.53 c.1.2.4 111772 2i9iA 254 86.60