# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.65e-25 c.56.5.6 90921 1xovA 326 2.93e-21 b.34.11.4,c.56.5.6 122206,122207 3b2yA 275 0.9346 3bijA 285 1.069 1iow 306 1.549 1cg2A 393 1.614 c.56.5.4,d.58.19.1 33844,39360 2bcoA 350 2.061 c.56.5.7 128302 1iowA 306 2.656 c.30.1.2,d.142.1.1 31713,41481 1gsa 316 2.860 1ycdA 243 3.096 1o2dA 371 7.314 e.22.1.2 86591 1vgyA 393 7.373 c.56.5.4,d.58.19.1 100620,100621 1uslA 170 8.270 c.121.1.1 99871 2eklA 313 8.509 1x8hA 228 8.888 d.157.1.1 114961 2g76A 335 8.976 1sbpA 310 9.309 c.94.1.1 35760 1rrmA 386 11.01 e.22.1.2 105081 2i87A 364 11.40 2gu2A 312 12.00 1pnoA 180 12.87 c.31.1.4 94953 2aioA 269 13.80 d.157.1.1 126829 1d4oA 184 13.91 c.31.1.4 31748 1s6yA 450 14.46 c.2.1.5,d.162.1.2 105314,105315 1vhoA 346 14.94 b.49.3.1,c.56.5.4 100694,100695 4eugA 229 15.44 c.18.1.1 31019 1e4eA 343 15.73 c.30.1.2,d.142.1.1 59221,59222 1rtqA 299 15.77 c.56.5.4 97819 1d3vA 323 16.38 c.42.1.1 32559 2fssA 365 16.39 3cpxA 321 16.64 3bk2A 562 17.01 1m6yA 301 17.28 a.60.13.1,c.66.1.23 78716,78717 2p0aA 344 17.72 2qs9A 194 18.63 1dxy 333 18.95 2id1A 130 19.15 1i7nA 309 19.27 c.30.1.5,d.142.1.3 83681,83682 1wmaA 276 19.56 c.2.1.2 121042 1tkjA 284 19.73 c.56.5.4 119296 1atg 231 21.24 2fqxA 318 21.56 2q7dA 346 24.47 1yqeA 282 24.91 c.56.7.1 123879 2ef5A 290 25.10 1ei9A 279 25.56 c.69.1.13 34713 1f0kA 364 25.96 c.87.1.2 35465 2bkwA 385 26.20 c.67.1.3 128714 8abp 306 26.35 1atgA 231 26.63 c.94.1.1 35834 1geqA 248 28.11 c.1.2.4 28589 1xdwA 331 29.27 2cukA 311 29.90 3cc1A 433 30.17 2j6iA 364 30.60 1anfA 370 32.08 c.94.1.1 35776 2ffeA 311 32.11 c.143.1.1 133381 2pezA 179 32.81 2i7xA 717 33.45 3cumA 302 33.85 1o1xA 155 33.93 c.121.1.1 86553 1ceo 343 35.05 1gsaA 316 35.50 c.30.1.3,d.142.1.1 31718,41477 1qq9A 284 35.83 c.56.5.4 33841 2qvbA 297 36.26 2gmnA 274 36.76 1jmkC 230 37.02 c.69.1.22 71747 1ytvA 366 37.05 c.94.1.1 124016 2gh9A 386 37.25 2an1A 292 37.95 1ivnA 190 38.56 c.23.10.5 83719 1amfA 233 38.79 c.94.1.1 35833 2pblA 262 39.13 2q4zA 312 39.53 1rd5A 262 39.77 c.1.2.4 111772 2i7vA 459 40.69 1r1dA 247 40.99 c.69.1.29 96813 1anf 370 41.12 2gcgA 330 42.30 1yloA 348 43.19 b.49.3.1,c.56.5.4 123659,123660 1a7tA 232 44.31 d.157.1.1 42041 2qjwA 176 45.43 1hi9A 274 45.82 c.99.1.1 61063 1kq3A 376 46.96 e.22.1.2 68790 1i24A 404 48.55 c.2.1.2 83663 2q0oA 236 48.62 1wwkA 307 49.48 1w24A 182 49.50 d.159.1.7 120579 2h5yA 254 52.36 2rb7A 364 53.72 1xklA 273 54.33 c.69.1.20 115410 2pvpA 367 54.86 1n2sA 299 55.32 c.2.1.2 79857 1lehA 364 55.49 c.2.1.7,c.58.1.1 30268,33916 2dztA 248 56.08 1v93A 296 57.05 c.1.23.1 100532 2oztA 332 57.12 1y0yA 353 57.18 b.49.3.1,c.56.5.4 122514,122515 1vljA 407 57.87 e.22.1.2 108832 2hxwA 237 57.99 2ax4A 198 58.71 1vf8A 377 58.78 c.1.8.5,d.26.3.1 120029,120030 1li4A 432 58.88 c.2.1.4,c.23.12.3 84616,84617 2qvpA 275 59.73 1jihA 531 59.94 d.240.1.1,e.8.1.7 90374,90375 2a5lA 200 61.53 c.23.5.8 126176 2jfkA 433 62.47 1kjnA 157 63.02 c.115.1.1 72614 2onsA 314 63.15 2gcuA 245 64.49 1zi8A 236 65.77 1id1A 153 65.89 c.2.1.9 62286 1amf 233 66.91 2booA 247 68.67 2vptA 215 69.01 1yzfA 195 69.34 c.23.10.5 124275 1bn7A 294 69.74 c.69.1.8 34677 1uxoA 192 71.58 c.69.1.31 108121 2d59A 144 71.84 c.2.1.8 131266 1ta9A 450 71.88 1u0tA 307 72.10 e.52.1.1 107567 1y81A 138 73.06 c.2.1.8 122731 4ts1A 319 73.62 c.26.1.1 31565 3bzwA 274 73.65 1rtrA 301 73.96 a.128.1.1 97820 1nmsA 249 74.45 c.17.1.1 85879 1jq5A 370 75.50 e.22.1.2 67084 2pe3A 354 75.86 2dpiA 420 75.88 d.240.1.1,e.8.1.7 131612,131613 1ccwA 137 76.65 c.23.6.1 31238 1ve2A 235 76.87 c.90.1.1 120008 1aj2A 282 77.17 c.1.21.1 29665 1t6cA 315 77.33 c.55.1.8,c.55.1.8 106558,106559 2odtX 328 77.69 2o5aA 125 79.29 1tfuA 157 79.59 c.26.1.3 106859 1c8bA 371 79.81 c.56.1.2 59082 1wcwA 261 81.80 2hxmA 223 82.03 c.18.1.1 136857 1m2xA 223 82.07 d.157.1.1 84764 3ce9A 354 84.24 1yb0A 159 84.37 d.118.1.1 122865 1gdhA 320 84.77 c.2.1.4,c.23.12.1 30095,31355 1j4aA 333 85.03 c.2.1.4,c.23.12.1 71502,71503 2yqzA 263 85.10 3c3dA 311 85.14 1z5vA 474 85.22 1zx1A 231 85.87 c.23.5.3 125760 2qryA 330 87.48 2pk3A 321 87.95 1h1yA 228 89.01 c.1.2.2 76506