# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.72e-25 c.56.5.6 90921 1xovA 326 5.10e-22 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.2149 1gsa 316 2.418 3b2yA 275 2.602 2bcoA 350 2.988 c.56.5.7 128302 1iowA 306 3.895 c.30.1.2,d.142.1.1 31713,41481 1iow 306 4.178 1sbpA 310 6.381 c.94.1.1 35760 2onsA 314 6.941 1o2dA 371 7.741 e.22.1.2 86591 1ycdA 243 10.01 3ce9A 354 10.75 1rrmA 386 10.79 e.22.1.2 105081 1atgA 231 10.91 c.94.1.1 35834 2q0oA 236 11.56 1atg 231 11.65 1hl2A 297 11.70 c.1.10.1 83581 1dxy 333 11.77 2fqxA 318 12.30 2gu2A 312 13.26 1ccwA 137 13.41 c.23.6.1 31238 1e4eA 343 13.88 c.30.1.2,d.142.1.1 59221,59222 2q7dA 346 14.69 1geqA 248 17.24 c.1.2.4 28589 2eklA 313 17.66 1vljA 407 19.76 e.22.1.2 108832 1jmkC 230 19.90 c.69.1.22 71747 2pcqA 283 20.48 1kq3A 376 20.77 e.22.1.2 68790 2p4qA 497 20.79 2qs9A 194 20.94 2ehhA 294 21.07 2o3aA 178 21.25 1d4oA 184 21.54 c.31.1.4 31748 1pnoA 180 21.91 c.31.1.4 94953 2q4zA 312 22.36 1pswA 348 23.50 c.87.1.7 88287 2pvpA 367 23.67 1amfA 233 24.40 c.94.1.1 35833 1gsaA 316 24.63 c.30.1.3,d.142.1.1 31718,41477 1jq5A 370 24.91 e.22.1.2 67084 2nuwA 288 25.37 1c8bA 371 27.51 c.56.1.2 59082 1xdwA 331 27.53 3cumA 302 28.26 1w3iA 293 28.29 c.1.10.1 109152 2an1A 292 28.74 2rfgA 297 29.03 1r1dA 247 30.11 c.69.1.29 96813 1c7qA 445 30.33 c.80.1.2 35307 2bkwA 385 30.71 c.67.1.3 128714 1u0tA 307 30.94 e.52.1.1 107567 1nmsA 249 31.41 c.17.1.1 85879 1ei9A 279 31.47 c.69.1.13 34713 2qryA 330 32.37 2hxwA 237 32.38 1sffA 426 32.95 c.67.1.4 105482 1d3vA 323 33.39 c.42.1.1 32559 2h5yA 254 33.50 3c9fA 557 34.85 3cc1A 433 36.27 1oj7A 408 36.81 e.22.1.2 103971 1ta9A 450 38.06 2i87A 364 38.21 1h1yA 228 39.62 c.1.2.2 76506 2cukA 311 39.65 2jfkA 433 40.44 1lehA 364 40.69 c.2.1.7,c.58.1.1 30268,33916 2ojpA 292 40.77 1li4A 432 40.79 c.2.1.4,c.23.12.3 84616,84617 1i7nA 309 41.43 c.30.1.5,d.142.1.3 83681,83682 1ufoA 238 43.13 c.69.1.27 99344 2jejA 358 45.03 d.240.1.1,e.8.1.7 138284,138285 1tkjA 284 45.37 c.56.5.4 119296 1rtqA 299 45.71 c.56.5.4 97819 2aioA 269 46.16 d.157.1.1 126829 2p0aA 344 47.83 1jx4A 352 47.98 d.240.1.1,e.8.1.7 90378,90379 1zetA 388 48.09 d.240.1.1,e.8.1.7 124997,124998 2yxbA 161 48.75 2pgdA 482 49.32 a.100.1.1,c.2.1.6 18778,30190 2i6jA 161 50.59 2v9dA 343 52.90 1iktA 120 54.27 d.106.1.1 66188 1cg2A 393 55.24 c.56.5.4,d.58.19.1 33844,39360 1yqeA 282 55.63 c.56.7.1 123879 1brtA 277 55.79 c.69.1.12 34699 1obrA 326 56.65 c.56.5.2 33828 2pblA 262 57.64 2d0iA 333 58.50 2r91A 286 58.79 2odtX 328 61.13 1dxyA 333 61.19 c.2.1.4,c.23.12.1 30094,31354 1aj2A 282 62.93 c.1.21.1 29665 2pgd 482 63.27 1amf 233 63.42 1tuoA 464 63.45 1uxoA 192 63.63 c.69.1.31 108121 2i3dA 249 63.96 1jihA 531 64.97 d.240.1.1,e.8.1.7 90374,90375 1tqhA 247 65.18 c.69.1.29 107225 2dpiA 420 65.75 d.240.1.1,e.8.1.7 131612,131613 1uslA 170 67.64 c.121.1.1 99871 2fssA 365 67.72 2g76A 335 68.21 1xvxA 312 68.65 c.94.1.1 116097 1yqgA 263 68.71 2id1A 130 69.60 4eugA 229 69.85 c.18.1.1 31019 2pezA 179 70.78 1ad2A 228 71.05 e.24.1.1 43353 2hxmA 223 72.28 c.18.1.1 136857 1qz5A 375 72.54 c.55.1.1,c.55.1.1 96614,96615 1u3dA 509 73.09 a.99.1.1,c.28.1.1 107638,107639 1x8hA 228 74.08 d.157.1.1 114961 1ecfA 504 75.26 c.61.1.1,d.153.1.1 34053,41820 2dztA 248 75.53 1n08A 163 75.86 b.43.5.1 79730 2pjkA 178 77.53 1q0qA 406 78.54 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1kamA 194 78.67 c.26.1.3 72254 1y37A 304 78.71 1owlA 484 78.90 a.99.1.1,c.28.1.1 93647,93648 1p5dX 463 80.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1anfA 370 81.00 c.94.1.1 35776 1z7aA 308 81.54 c.6.2.6 124591 1aj2 282 82.16 2gt1A 326 84.45 2atsA 292 84.87 c.1.10.1 127306 1vhoA 346 85.37 b.49.3.1,c.56.5.4 100694,100695 2hmcA 344 85.86 2gmnA 274 87.58 1tfuA 157 87.97 c.26.1.3 106859 1yloA 348 89.03 b.49.3.1,c.56.5.4 123659,123660 1wwkA 307 89.42