# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.89e-11 c.56.5.6 90921 1xovA 326 8.79e-10 b.34.11.4,c.56.5.6 122206,122207 1u3dA 509 1.761 a.99.1.1,c.28.1.1 107638,107639 3bijA 285 5.046 1iowA 306 5.894 c.30.1.2,d.142.1.1 31713,41481 1nmsA 249 6.963 c.17.1.1 85879 1iow 306 9.091 2hufA 393 9.262 1sbpA 310 9.635 c.94.1.1 35760 1ta9A 450 11.19 2p6wA 213 13.25 2i0fA 157 13.36 1lhpA 312 13.79 c.72.1.5 77960 1eexB 224 14.04 c.51.3.1 33213 2odtX 328 15.42 2dbqA 334 16.10 2o4cA 380 16.82 1dbwA 126 18.34 c.23.1.1 31095 2p35A 259 19.25 1xmpA 170 19.70 c.23.8.1 115521 1sbp 310 21.21 2fp3A 316 21.65 1dxyA 333 22.33 c.2.1.4,c.23.12.1 30094,31354 2i8lA 156 22.81 1dxy 333 22.88 2qs9A 194 23.85 1xs5A 241 25.49 c.94.1.1 115912 1iukA 140 25.73 c.2.1.8 83712 2bkwA 385 26.15 c.67.1.3 128714 2amjA 204 26.26 3ce9A 354 26.50 1l7dA 384 26.65 c.2.1.4,c.23.12.2 77774,77775 1qdlB 195 26.80 c.23.16.1 31437 2onsA 314 26.84 2j07A 420 27.17 a.99.1.1,c.28.1.1 137891,137892 1o2dA 371 27.33 e.22.1.2 86591 1t0bA 252 27.92 c.23.16.6 106199 1wyuA 438 28.20 c.67.1.7 121452 2f7lA 455 28.50 1vicA 262 29.13 c.68.1.13 100756 1np7A 489 29.39 a.99.1.1,c.28.1.1 80677,80678 1xc1A 309 29.44 c.94.1.1 109543 1iugA 352 30.03 c.67.1.3 90699 1w4xA 542 30.21 c.3.1.5,c.3.1.5 109171,109172 2cukA 311 30.53 1i1qB 192 30.83 c.23.16.1 61544 1ccwA 137 31.21 c.23.6.1 31238 1twyA 290 31.39 c.94.1.1 112767 1p5dX 463 33.25 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 3b8xA 390 34.47 1d4aA 273 34.55 c.23.5.3 31219 2c92A 160 34.73 1tezA 474 34.79 a.99.1.1,c.28.1.1 112409,112410 1h7eA 245 34.94 c.68.1.13 60717 1p99A 295 35.65 c.94.1.1 94384 1yp1A 202 35.69 1bg6A 359 35.87 a.100.1.5,c.2.1.6 18810,30214 2d0oB 125 36.02 c.51.3.2 131078 1nbwB 117 36.59 c.51.3.2 80396 2dr1A 386 36.83 1wwkA 307 37.32 1rrmA 386 37.73 e.22.1.2 105081 1xvxA 312 38.24 c.94.1.1 116097 1lvwA 295 38.66 c.68.1.6 84723 1qp8A 303 38.91 c.2.1.4,c.23.12.1 30092,31352 1j4aA 333 39.49 c.2.1.4,c.23.12.1 71502,71503 1qczA 169 39.61 c.23.8.1 31276 1i7qB 193 39.92 c.23.16.1 61902 1wl8A 189 40.11 c.23.16.1 120997 1zud1 251 41.29 2i7cA 283 42.21 1u7nA 336 43.38 c.77.1.4 107726 2i6jA 161 43.45 2an1A 292 44.91 2yxbA 161 45.09 1uxoA 192 45.44 c.69.1.31 108121 2gcgA 330 45.85 1sqsA 242 49.27 c.23.5.5 98968 2h88A 621 49.71 2dgkA 452 50.16 1chuA 540 50.44 a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1jf9A 408 50.52 c.67.1.3 62931 1jq5A 370 50.88 e.22.1.2 67084 2gu2A 312 51.27 2i5eA 211 51.53 1hdoA 206 51.89 c.2.1.2 60965 2aotA 292 53.80 c.66.1.19 127098 1xdwA 331 54.20 1jixA 351 54.73 c.87.1.1 63081 2z9wA 392 54.88 1ycdA 243 55.03 1bykA 255 56.28 c.93.1.1 35706 1vhqA 232 56.51 c.23.16.2 100696 2ef5A 290 56.69 1vljA 407 56.85 e.22.1.2 108832 1kmkA 406 56.92 c.67.1.3 68696 1e4eA 343 57.75 c.30.1.2,d.142.1.1 59221,59222 1i6aA 219 57.82 c.94.1.1 61827 1gdhA 320 57.89 c.2.1.4,c.23.12.1 30095,31355 2a5lA 200 60.21 c.23.5.8 126176 1kufA 203 60.36 d.92.1.9 73007 1zx1A 231 60.57 c.23.5.3 125760 2arkA 188 60.63 c.23.5.8 127202 2q7dA 346 60.68 1srrA 124 61.10 c.23.1.1 31110 1budA 197 61.11 d.92.1.9 40328 1kugA 203 61.21 d.92.1.9 73008 1g8lA 411 61.37 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ydgA 211 61.38 c.23.5.8 116614 1atlA 202 61.45 d.92.1.9 40322 2d59A 144 61.64 c.2.1.8 131266 1gq6A 313 61.71 c.42.1.1 70341 1u0sY 118 62.28 c.23.1.1 107566 1e5kA 201 62.68 c.68.1.8 34578 1y0pA 571 62.85 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2q5cA 196 63.57 1h5rA 293 64.29 c.68.1.6 65623 1owlA 484 65.17 a.99.1.1,c.28.1.1 93647,93648 2a9oA 120 66.01 c.23.1.1 126444 2f62A 161 66.72 c.23.14.1 133021 2is8A 164 66.87 2qwxA 231 67.08 1wqaA 455 67.27 1wstA 417 67.94 c.67.1.1 121244 1zmtA 254 68.01 c.2.1.2 125363 2hxwA 237 68.57 1y80A 210 69.08 1usgA 346 69.39 c.93.1.1 99864 2g76A 335 69.54 3b2nA 133 69.57 1tmyA 120 69.75 c.23.1.1 31083 1t13A 158 70.28 2j4dA 525 71.19 2obxA 157 71.46 1kgsA 225 72.71 a.4.6.1,c.23.1.1 68596,68597 1m6sA 347 73.48 c.67.1.1 78701 2r00A 336 74.68 2q0sA 216 74.96 1qnaA 200 75.03 d.129.1.1,d.129.1.1 41226,41227 2dvmA 439 75.14 1u11A 182 75.81 c.23.8.1 107576 2v3gA 283 76.35 1lqtA 456 77.82 c.3.1.1,c.4.1.1 74198,74199 2qvcA 313 78.18 2q4zA 312 80.99 2pi1A 334 81.16 1mkzA 172 81.82 c.57.1.1 84998 1ka9H 200 82.22 c.23.16.1 77308 2driA 271 82.82 c.93.1.1 35637 1x0lA 333 83.09 1z15A 344 83.11 3brkX 420 83.59 1fmtA 314 83.80 b.46.1.1,c.65.1.1 25758,34174 1yp2A 451 83.98 b.81.1.4,c.68.1.6 123798,123799 1eziA 228 84.57 c.68.1.13 34512 1yqeA 282 85.06 c.56.7.1 123879 1lsuA 147 86.69 c.2.1.9 74250 1r55A 214 86.93 d.92.1.9 111694 1gtkA 313 87.10 c.94.1.1,d.50.2.1 76346,76347 2p2sA 336 87.73 2g1uA 155 87.74 2citA 282 88.82 c.1.8.3 130499 2yrrA 353 89.13 1vhvA 268 89.31 c.90.1.1 100704 2qzjA 136 89.54 2bs3A 656 89.80 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1s6yA 450 89.89 c.2.1.5,d.162.1.2 105314,105315