# List of top-scoring protein chains for T0425.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.19e-40 c.56.5.6 90921 1xovA 326 4.02e-17 b.34.11.4,c.56.5.6 122206,122207 1ziuA 370 1.483 c.94.1.1 125138 1nt0A 286 3.210 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1ot8A 239 3.242 d.211.1.1 93507 2ga8A 359 8.045 1r6zA 509 11.60 b.34.14.1,c.94.1.1 97169,97170 2yxbA 161 12.34 2jmpA 107 14.21 1y4tA 322 15.27 c.94.1.1 116464 2qryA 330 15.38 3b5nD 64 17.09 1iovA 306 17.59 c.30.1.2,d.142.1.1 31714,41482 1iowA 306 17.89 c.30.1.2,d.142.1.1 31713,41481 1yznA 185 18.63 c.37.1.8 124284 1e5dA 402 20.63 c.23.5.1,d.157.1.3 31208,42061 1sbpA 310 21.51 c.94.1.1 35760 1mdqA 371 22.42 c.94.1.1 35783 1qokA 282 22.87 b.1.1.1,b.1.1.1 20492,20493 1mh3A 421 22.87 a.4.1.1,c.94.1.1 79112,79113 1i9sA 210 23.09 c.45.1.1 62099 1ytvA 366 25.75 c.94.1.1 124016 1gq6A 313 26.73 c.42.1.1 70341 2opvA 85 26.91 1nl5A 366 27.34 c.94.1.1 91953 1mdp1 363 28.50 1fqbA 370 28.94 c.94.1.1 59985 1ezoA 370 28.98 c.94.1.1 59539 1mpbA 370 29.06 c.94.1.1 35780 1anfA 370 29.10 c.94.1.1 35776 1t0kA 381 29.17 c.94.1.1 106214 1n3xA 366 29.21 c.94.1.1 91609 1nmuA 382 29.54 c.94.1.1 80665 1iudA 380 30.13 c.94.1.1 35786 2pvpA 367 30.34 1ei1A 391 30.48 d.14.1.3,d.122.1.2 37570,41104 1a7lA 389 30.66 c.94.1.1 35787 1r66A 337 30.76 c.2.1.2 97146 1m22A 503 31.08 c.117.1.1 78464 2nvuB 805 31.15 c.111.1.2,c.94.1.1 138661,138662 2c46A 241 31.33 1r6dA 337 31.67 c.2.1.2 97148 1b24A 188 31.80 d.95.2.1,d.95.2.1 40573,40574 2ok2A 402 32.38 1y4cA 494 33.98 1pk3A 89 34.27 a.60.1.2 118715 2r3bA 310 38.72 1fmcA 255 38.81 c.2.1.2 29856 3c4mA 539 39.05 1ny1A 240 39.62 c.6.2.3 86395 1ti8A 314 40.71 b.19.1.2 119279 2j13A 247 40.73 c.6.2.3 137934 1jvyA 372 41.66 c.94.1.1 63308 2ef5A 290 43.04 2eivA 291 43.67 2fl7A 232 44.77 1uikA 418 45.20 b.82.1.2,b.82.1.2 107878,107879 1szbA 170 46.59 b.23.1.1,g.3.11.1 106145,106146 2vgqA 477 48.40 2fvuA 222 49.61 1e19A 314 49.99 c.73.1.1 34967 1svxB 395 51.10 c.94.1.1 106059 1laxA 370 53.34 c.94.1.1 84576 1hsjA 487 54.31 a.4.5.28,c.94.1.1 61237,61238 1w1b1 257 54.75 1im5A 180 54.84 c.33.1.3 66211 2exxA 306 57.39 1pk1B 89 61.62 a.60.1.2 118712 1w17A 263 61.71 c.6.2.3 120573 1i1rB 181 62.07 a.26.1.1 61548 1rfzA 168 63.66 a.195.1.1 97411 2rdo9 233 63.75 2b78A 385 64.06 b.122.1.9,c.66.1.51 128025,128026 2dt8A 280 66.31 2cqyA 108 70.52 1qwgA 251 71.05 c.1.27.1 96473 1o4vA 183 71.40 c.23.8.1 86628 2gi3A 476 73.40 c.117.1.1 135220 1f2fA 104 73.56 d.93.1.1 40455 2fpoA 202 74.24 c.66.1.46 133909 2g2dA 193 75.01 1bkmA 113 75.35 d.93.1.1 40426 1nzlA 103 75.62 d.93.1.1 86453 1p13A 102 76.03 d.93.1.1 93892 1is0A 106 76.09 d.93.1.1 66299 1shaA 104 76.52 d.93.1.1 40424 2pnfA 248 78.04 1skjA 113 78.19 d.93.1.1 40427 2enjA 138 79.05 1ob8A 135 79.95 c.52.1.18 111627 1jd7A 453 80.14 b.71.1.1,c.1.8.1 77104,77105 1n9wA 422 80.31 b.40.4.1,d.104.1.1 85473,85474 2aepH 217 80.67 b.1.1.2 126639 1kc2A 103 81.06 d.93.1.1 72291 1kxhA 448 82.38 b.71.1.1,c.1.8.1 73151,73152 1g94A 448 82.59 b.71.1.1,c.1.8.1 65169,65170 2gfqA 298 83.30 c.56.7.1 135106 1qhhB 273 83.45 1jd9A 453 83.94 b.71.1.1,c.1.8.1 77106,77107 2z5yA 513 84.56 1aqmA 453 85.39 b.71.1.1,c.1.8.1 27717,28704 2gya2 222 86.04 1ympA 135 88.36 1lroA 267 89.92 c.1.10.4 78161