# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.93e-30 c.56.5.6 90921 1xovA 326 2.15e-26 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.3405 3bijA 285 0.3581 2odtX 328 1.560 1iowA 306 1.924 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 2.226 e.22.1.2 67084 1gsa 316 3.323 1cg2A 393 3.485 c.56.5.4,d.58.19.1 33844,39360 1ujnA 348 4.614 e.22.1.1 99460 1dnpA 471 4.894 a.99.1.1,c.28.1.1 18775,31630 2i87A 364 5.825 2rb7A 364 6.235 2dpiA 420 6.900 d.240.1.1,e.8.1.7 131612,131613 1dv2A 452 9.018 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1g67A 225 9.260 c.1.3.1 60311 1eg5A 384 9.604 c.67.1.3 34429 1vljA 407 9.796 e.22.1.2 108832 1yloA 348 10.09 b.49.3.1,c.56.5.4 123659,123660 1iow 306 10.29 1ccwA 137 10.54 c.23.6.1 31238 1yqeA 282 12.04 c.56.7.1 123879 3cpxA 321 12.05 1vgyA 393 12.06 c.56.5.4,d.58.19.1 100620,100621 3ce9A 354 12.29 2ef5A 290 12.70 1mldA 314 12.97 c.2.1.5,d.162.1.1 30122,42089 2fuvA 549 13.21 2cukA 311 13.75 2q7dA 346 13.91 1o2dA 371 15.21 e.22.1.2 86591 1dv1A 449 15.46 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1e4eA 343 15.91 c.30.1.2,d.142.1.1 59221,59222 1vhoA 346 16.72 b.49.3.1,c.56.5.4 100694,100695 1byiA 224 16.75 c.37.1.10 32199 1uc8A 280 16.96 c.30.1.6,d.142.1.7 99165,99166 2yrrA 353 17.17 1cs1A 386 17.81 c.67.1.3 34399 1byi 224 17.98 1tca 317 18.88 1rrmA 386 19.59 e.22.1.2 105081 2o3aA 178 19.62 1gsaA 316 20.25 c.30.1.3,d.142.1.1 31718,41477 1uslA 170 20.81 c.121.1.1 99871 2j0aA 280 20.82 1g3qA 237 21.98 c.37.1.10 60237 1p5dX 463 22.58 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2nuwA 288 23.38 1ta9A 450 23.44 3cyjA 372 24.58 2vguA 407 25.14 2rfgA 297 25.16 1nnfA 309 25.56 c.94.1.1 85903 2z1mA 345 26.00 2qh8A 302 26.38 2yxbA 161 26.70 3c3kA 285 26.92 3ct9A 356 29.71 1o5kA 306 30.23 c.1.10.1 92504 1ys7A 233 30.96 a.4.6.1,c.23.1.1 123961,123962 1o1xA 155 31.81 c.121.1.1 86553 2dr1A 386 32.08 2ehhA 294 32.21 1ukz 203 32.57 1ra0A 430 33.27 b.92.1.2,c.1.9.5 111756,111757 1ehiA 377 33.33 c.30.1.2,d.142.1.1 31716,41484 2fvgA 340 34.27 b.49.3.1,c.56.5.4 134201,134202 2r91A 286 35.12 2viaA 405 35.24 1k2yX 463 35.69 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1k0wA 231 36.18 c.74.1.1 77220 2pe3A 354 36.25 1wqaA 455 37.28 1fnoA 417 38.42 d.58.19.1,c.56.5.4 70145,75841 2yutA 207 39.08 1anf 370 39.37 1tuoA 464 39.83 2q4zA 312 40.79 2qyvA 487 40.94 1np6A 174 41.03 c.37.1.10 85954 2j07A 420 41.21 a.99.1.1,c.28.1.1 137891,137892 1omp 370 41.68 1ytvA 366 42.35 c.94.1.1 124016 1sbpA 310 42.45 c.94.1.1 35760 4eugA 229 42.57 c.18.1.1 31019 1xjcA 169 42.95 c.37.1.10 115387 3b2yA 275 43.09 2pcqA 283 44.51 1y0yA 353 44.77 b.49.3.1,c.56.5.4 122514,122515 2alzA 390 45.84 d.240.1.1,e.8.1.7 126994,126995 1kq3A 376 48.04 e.22.1.2 68790 1ycdA 243 48.11 4xis 387 48.16 2gcgA 330 48.45 1tfuA 157 48.94 c.26.1.3 106859 1vheA 373 49.02 b.49.3.1,c.56.5.4 100669,100670 3brqA 296 49.18 1x31B 404 49.53 1dhpA 292 49.90 c.1.10.1 29097 1laxA 370 50.59 c.94.1.1 84576 1hi9A 274 51.87 c.99.1.1 61063 3xis 387 53.54 1hdoA 206 54.96 c.2.1.2 60965 1c0pA 363 55.29 c.4.1.2,d.16.1.3 30647,37934 1cs0A 1073 55.30 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1z2iA 358 55.62 2ojpA 292 56.34 1bg6A 359 57.00 a.100.1.5,c.2.1.6 18810,30214 1ja1A 622 57.53 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1v9nA 360 57.57 1mrzA 293 58.36 b.43.5.1,c.26.1.3 91452,91453 1gtvA 214 58.44 c.37.1.1 70537 1ad4A 266 58.59 c.1.21.1 29670 1nal1 297 59.04 3canA 182 59.74 1pswA 348 60.33 c.87.1.7 88287 2hjpA 290 60.61 1xkyA 301 61.07 c.1.10.1 122094 2rgyA 290 61.35 1sbp 310 61.81 1uhvA 500 62.40 b.71.1.2,c.1.8.3 99402,99403 3b4uA 294 62.59 1kjnA 157 62.69 c.115.1.1 72614 2bjvA 265 63.15 2j44A 217 63.72 1bx4A 345 64.05 c.72.1.1 34935 4mbp 370 64.15 1wcwA 261 64.27 1ye8A 178 65.42 c.37.1.11 123010 1amfA 233 66.66 c.94.1.1 35833 1id1A 153 66.72 c.2.1.9 62286 1vecA 206 67.38 c.37.1.19 100575 8abp 306 67.67 2a0mA 316 67.88 c.42.1.1 125960 2f1kA 279 69.14 a.100.1.12,c.2.1.6 132772,132773 1gq6A 313 69.35 c.42.1.1 70341 2qt3A 403 69.75 2a6lA 292 69.89 c.1.10.1 126285 1yadA 221 70.20 1amf 233 70.31 1muwA 386 70.34 c.1.15.3 79495 2rghA 571 70.77 2q43A 418 70.84 c.56.5.4,d.58.19.1 139821,139822 2r78A 117 71.83 1w3iA 293 72.65 c.1.10.1 109152 2eenA 183 75.85 1hl2A 297 76.18 c.1.10.1 83581 2a6nA 292 76.53 c.1.10.1 126289 2irpA 208 77.43 1tkjA 284 77.84 c.56.5.4 119296 1ur5A 309 78.16 c.2.1.5,d.162.1.1 99807,99808 1auk 489 78.50 2ax4A 198 78.95 1qq9A 284 79.85 c.56.5.4 33841 2ar9A 278 80.24 2yw2A 424 80.31 1p3wA 404 80.66 c.67.1.3 87752 2o4cA 380 80.87 2ayyA 121 80.88 c.23.1.6 127576 1el5A 389 81.29 c.3.1.2,d.16.1.3 30369,37937 2hxmA 223 81.75 c.18.1.1 136857 2dj5A 133 82.04 c.92.1.3 131536 2o1sA 621 82.58 1xfoA 357 82.61 b.49.3.1,c.56.5.4 115265,115266 2ghaA 382 83.35 1u8sA 192 83.36 d.58.18.5,d.58.18.5 107737,107738 2o20A 332 83.55 2z7bA 270 84.17 1lssA 140 84.92 c.2.1.9 74246 1vh7A 265 85.66 c.1.2.1 100646 2dvzA 314 86.40 1f0kA 364 86.80 c.87.1.2 35465 1k20A 310 88.04 c.107.1.1 68027 2acaA 189 88.65 d.63.1.2 126545 2booA 247 88.76 2bv9A 290 89.14 c.1.8.3 129242