# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.56e-28 c.56.5.6 90921 1xovA 326 8.89e-25 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.5091 2h0aA 276 0.6790 2odtX 328 1.031 1iowA 306 2.825 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 3.661 e.22.1.2 67084 2i87A 364 4.700 1yloA 348 4.741 b.49.3.1,c.56.5.4 123659,123660 1cg2A 393 4.927 c.56.5.4,d.58.19.1 33844,39360 2q7dA 346 4.935 3cpxA 321 5.976 1vljA 407 6.320 e.22.1.2 108832 2ef5A 290 6.736 1gsa 316 7.673 1ujnA 348 8.000 e.22.1.1 99460 1vgyA 393 8.532 c.56.5.4,d.58.19.1 100620,100621 1rrmA 386 9.885 e.22.1.2 105081 1yqeA 282 10.05 c.56.7.1 123879 1vhoA 346 12.05 b.49.3.1,c.56.5.4 100694,100695 1fnoA 417 12.83 d.58.19.1,c.56.5.4 70145,75841 2rb7A 364 12.98 2pe3A 354 13.01 3ce9A 354 13.51 1dv2A 452 14.79 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1dnpA 471 14.96 a.99.1.1,c.28.1.1 18775,31630 1o2dA 371 16.43 e.22.1.2 86591 1tca 317 16.99 1e4eA 343 17.25 c.30.1.2,d.142.1.1 59221,59222 1g3qA 237 17.62 c.37.1.10 60237 2j0aA 280 19.26 2dpiA 420 19.66 d.240.1.1,e.8.1.7 131612,131613 1y0yA 353 19.71 b.49.3.1,c.56.5.4 122514,122515 1ccwA 137 23.40 c.23.6.1 31238 3cyjA 372 23.45 1byiA 224 23.51 c.37.1.10 32199 1g67A 225 23.65 c.1.3.1 60311 1byi 224 24.22 1iow 306 24.58 1xfoA 357 24.78 b.49.3.1,c.56.5.4 115265,115266 2yrrA 353 25.10 2q4zA 312 25.54 1uhvA 500 26.80 b.71.1.2,c.1.8.3 99402,99403 1eg5A 384 27.43 c.67.1.3 34429 2fvgA 340 28.10 b.49.3.1,c.56.5.4 134201,134202 1p5dX 463 28.33 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1ra0A 430 28.39 b.92.1.2,c.1.9.5 111756,111757 2nuwA 288 29.16 1o1xA 155 29.74 c.121.1.1 86553 2cukA 311 29.85 1mldA 314 31.64 c.2.1.5,d.162.1.1 30122,42089 2o3aA 178 31.65 2yutA 207 31.99 1uslA 170 33.61 c.121.1.1 99871 2yxbA 161 35.16 1ta9A 450 36.13 1ehiA 377 37.15 c.30.1.2,d.142.1.1 31716,41484 1k2yX 463 37.75 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2fuvA 549 37.76 4eugA 229 38.62 c.18.1.1 31019 1o5kA 306 38.76 c.1.10.1 92504 3ct9A 356 38.94 1dv1A 449 39.51 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2rghA 571 39.67 2ehhA 294 39.71 2r78A 117 40.59 1hyhA 309 40.88 c.2.1.5,d.162.1.1 30150,42117 1k0wA 231 41.56 c.74.1.1 77220 2qyvA 487 41.79 1wqaA 455 42.04 2q43A 418 42.18 c.56.5.4,d.58.19.1 139821,139822 1vheA 373 44.18 b.49.3.1,c.56.5.4 100669,100670 2vguA 407 44.54 1np6A 174 45.54 c.37.1.10 85954 2qh8A 302 46.32 2r91A 286 47.14 1ye8A 178 47.31 c.37.1.11 123010 1cs1A 386 47.57 c.67.1.3 34399 2viaA 405 48.86 2a0mA 316 49.37 c.42.1.1 125960 2o4cA 380 50.02 1gsaA 316 50.19 c.30.1.3,d.142.1.1 31718,41477 2bv9A 290 50.76 c.1.8.3 129242 2booA 247 50.77 1tuoA 464 51.49 2qs9A 194 51.94 1ivnA 190 52.74 c.23.10.5 83719 2irpA 208 53.52 1v9nA 360 53.96 2bjvA 265 54.58 2dj5A 133 55.83 c.92.1.3 131536 2z1mA 345 56.30 1bx4A 345 56.44 c.72.1.1 34935 2dr1A 386 56.67 2ojpA 292 57.46 1c0pA 363 58.35 c.4.1.2,d.16.1.3 30647,37934 2qt3A 403 59.07 1tfuA 157 59.42 c.26.1.3 106859 1xkyA 301 59.97 c.1.10.1 122094 1nal1 297 60.12 2ayyA 121 61.10 c.23.1.6 127576 2fiuA 99 63.29 d.58.4.16 133537 2hxmA 223 63.36 c.18.1.1 136857 1ad2A 228 63.60 e.24.1.1 43353 2o1sA 621 64.73 1ukz 203 65.31 3b4uA 294 67.22 2fssA 365 67.71 1gq6A 313 68.06 c.42.1.1 70341 2z06A 252 68.85 1ad4A 266 69.14 c.1.21.1 29670 3xis 387 70.44 1z2iA 358 71.06 2pcqA 283 71.35 1anf 370 71.42 3c5vA 316 71.88 1dhpA 292 73.85 c.1.10.1 29097 3c3kA 285 73.90 1oj7A 408 73.94 e.22.1.2 103971 2rfgA 297 74.22 1nnfA 309 75.04 c.94.1.1 85903 1ja1A 622 75.71 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1ys7A 233 76.09 a.4.6.1,c.23.1.1 123961,123962 2hneA 436 77.25 1ytvA 366 77.34 c.94.1.1 124016 2z7bA 270 78.66 2f7lA 455 79.14 2gcgA 330 79.52 1lehA 364 79.81 c.2.1.7,c.58.1.1 30268,33916 1ycdA 243 79.92 2ax4A 198 80.03 1ty9A 222 80.14 b.45.1.1 112827 1yeyA 444 80.39 c.1.11.2,d.54.1.1 116664,116665 1muwA 386 80.68 c.1.15.3 79495 2f1kA 279 80.75 a.100.1.12,c.2.1.6 132772,132773 1eceA 358 81.58 c.1.8.3 28813 2a6lA 292 82.13 c.1.10.1 126285 1kq3A 376 82.79 e.22.1.2 68790 1o12A 376 83.29 b.92.1.5,c.1.9.10 80758,80759 1hdoA 206 83.74 c.2.1.2 60965 1gqiA 708 83.86 c.1.8.10,d.92.2.2 76279,76280 1lt3A 240 84.02 d.166.1.1 42230 1auk 489 85.30 1j2rA 199 85.83 c.33.1.3 90788 2hjpA 290 86.16 1x24A 180 86.80 1p49A 562 87.16 c.76.1.2 94089 1el5A 389 87.36 c.3.1.2,d.16.1.3 30369,37937 1u8sA 192 87.62 d.58.18.5,d.58.18.5 107737,107738 1bg6A 359 87.70 a.100.1.5,c.2.1.6 18810,30214 2yvqA 143 87.80 1hi9A 274 88.70 c.99.1.1 61063 1id1A 153 89.15 c.2.1.9 62286