# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 8.70e-31 c.56.5.6 90921 1xovA 326 3.92e-26 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.7763 2odtX 328 1.031 1iowA 306 2.149 c.30.1.2,d.142.1.1 31713,41481 2h0aA 276 2.473 1vgyA 393 2.807 c.56.5.4,d.58.19.1 100620,100621 2dpiA 420 3.141 d.240.1.1,e.8.1.7 131612,131613 1gsa 316 3.174 1vljA 407 3.436 e.22.1.2 108832 1ccwA 137 3.567 c.23.6.1 31238 1iow 306 3.654 2i87A 364 3.785 1yloA 348 4.518 b.49.3.1,c.56.5.4 123659,123660 1dv1A 449 4.741 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2q7dA 346 6.035 1dv2A 452 6.173 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1jq5A 370 6.375 e.22.1.2 67084 1rrmA 386 7.599 e.22.1.2 105081 2rb7A 364 7.670 1dnpA 471 8.345 a.99.1.1,c.28.1.1 18775,31630 2yxbA 161 9.136 2cukA 311 9.566 1kjnA 157 9.774 c.115.1.1 72614 1xjcA 169 10.67 c.37.1.10 115387 1ujnA 348 10.85 e.22.1.1 99460 1mldA 314 11.24 c.2.1.5,d.162.1.1 30122,42089 2fuvA 549 12.28 2qyvA 487 12.59 1vecA 206 12.83 c.37.1.19 100575 1nnfA 309 13.12 c.94.1.1 85903 3cyjA 372 14.23 1e4eA 343 14.69 c.30.1.2,d.142.1.1 59221,59222 1q35A 320 14.84 c.94.1.1 95661 1wcwA 261 15.84 2ef5A 290 16.47 1cg2A 393 17.50 c.56.5.4,d.58.19.1 33844,39360 2fiuA 99 18.32 d.58.4.16 133537 1x31B 404 18.46 1o1xA 155 20.58 c.121.1.1 86553 1ukz 203 20.59 1t3iA 420 21.95 c.67.1.3 106354 1gsaA 316 22.29 c.30.1.3,d.142.1.1 31718,41477 1yqeA 282 22.49 c.56.7.1 123879 2j0aA 280 23.02 1g67A 225 23.47 c.1.3.1 60311 1vhoA 346 23.60 b.49.3.1,c.56.5.4 100694,100695 1np6A 174 25.44 c.37.1.10 85954 1qwgA 251 25.57 c.1.27.1 96473 1lssA 140 26.48 c.2.1.9 74246 1wqaA 455 26.86 1ytvA 366 26.89 c.94.1.1 124016 1hdoA 206 27.61 c.2.1.2 60965 1k0wA 231 29.51 c.74.1.1 77220 1g3qA 237 29.53 c.37.1.10 60237 1fnoA 417 30.33 d.58.19.1,c.56.5.4 70145,75841 1byiA 224 31.37 c.37.1.10 32199 1eg5A 384 31.51 c.67.1.3 34429 1uc8A 280 31.80 c.30.1.6,d.142.1.7 99165,99166 1tuoA 464 32.82 2o3aA 178 32.87 4xis 387 33.14 2yw2A 424 34.11 1d2fA 390 34.19 c.67.1.3 34411 1byi 224 34.46 2alzA 390 34.61 d.240.1.1,e.8.1.7 126994,126995 1y9uA 323 34.64 c.94.1.1 116594 2f7lA 455 36.54 1h1yA 228 36.86 c.1.2.2 76506 1n08A 163 37.25 b.43.5.1 79730 1ycdA 243 37.56 2j07A 420 40.04 a.99.1.1,c.28.1.1 137891,137892 2qj8A 332 40.14 2irpA 208 40.39 2dr1A 386 41.60 1tezA 474 41.62 a.99.1.1,c.28.1.1 112409,112410 1o2dA 371 42.26 e.22.1.2 86591 3xis 387 42.47 2f1kA 279 43.09 a.100.1.12,c.2.1.6 132772,132773 1amfA 233 43.44 c.94.1.1 35833 1hlgA 371 43.86 c.69.1.6 34656 3cpxA 321 44.15 2q43A 418 44.43 c.56.5.4,d.58.19.1 139821,139822 1atgA 231 44.46 c.94.1.1 35834 1mrzA 293 45.24 b.43.5.1,c.26.1.3 91452,91453 1anf 370 45.55 1v9nA 360 45.89 2qh8A 302 46.76 2yutA 207 47.18 1p5dX 463 47.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1omp 370 48.00 1xhfA 123 48.02 c.23.1.1 122003 1hp1A 516 48.34 d.114.1.1,d.159.1.2 70976,70977 1ja1A 622 49.01 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2z7bA 270 49.43 2pe3A 354 49.46 2yrrA 353 49.56 2jejA 358 50.04 d.240.1.1,e.8.1.7 138284,138285 1y4tA 322 50.31 c.94.1.1 116464 1eyzA 392 51.57 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1ehiA 377 52.09 c.30.1.2,d.142.1.1 31716,41484 1dbwA 126 52.30 c.23.1.1 31095 2gh9A 386 52.37 1ye8A 178 53.41 c.37.1.11 123010 3ce9A 354 53.63 1ad1A 266 54.15 c.1.21.1 29668 1ra0A 430 54.86 b.92.1.2,c.1.9.5 111756,111757 1jx4A 352 56.60 d.240.1.1,e.8.1.7 90378,90379 1ad2A 228 56.92 e.24.1.1 43353 1z2iA 358 57.20 4eugA 229 57.79 c.18.1.1 31019 1phpA 394 57.98 c.86.1.1 35452 1k2yX 463 58.66 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 4mbp 370 59.67 1amf 233 59.72 1tca 317 59.77 1xc1A 309 61.44 c.94.1.1 109543 1uslA 170 61.99 c.121.1.1 99871 2gcgA 330 62.34 2e7jA 371 62.87 1u3dA 509 62.93 a.99.1.1,c.28.1.1 107638,107639 1laxA 370 63.28 c.94.1.1 84576 1wyuA 438 63.69 c.67.1.7 121452 1pswA 348 64.30 c.87.1.7 88287 1gq6A 313 64.34 c.42.1.1 70341 1ob8A 135 66.65 c.52.1.18 111627 1wekA 217 66.97 c.129.1.1 114553 3c8uA 208 67.44 1xvxA 312 69.84 c.94.1.1 116097 1kjqA 391 69.84 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1xfoA 357 69.90 b.49.3.1,c.56.5.4 115265,115266 2nu8B 388 69.99 2r91A 286 70.61 2z1mA 345 71.40 1o5kA 306 72.07 c.1.10.1 92504 1ys7A 233 73.41 a.4.6.1,c.23.1.1 123961,123962 1sbpA 310 73.46 c.94.1.1 35760 2nuwA 288 73.86 3ct9A 356 74.16 3c3kA 285 75.18 1lsuA 147 75.67 c.2.1.9 74250 2o4cA 380 76.22 2qt3A 403 76.93 2ojpA 292 76.96 2hxmA 223 77.13 c.18.1.1 136857 1f6yA 262 77.42 c.1.21.2 29673 1muwA 386 78.85 c.1.15.3 79495 1vh7A 265 79.08 c.1.2.1 100646 1kgsA 225 80.13 a.4.6.1,c.23.1.1 68596,68597 1rhcA 330 80.79 c.1.16.3 97468 1id1A 153 80.82 c.2.1.9 62286 1lehA 364 80.86 c.2.1.7,c.58.1.1 30268,33916 1cs1A 386 81.18 c.67.1.3 34399 2fvgA 340 81.36 b.49.3.1,c.56.5.4 134201,134202 1fpzA 212 81.57 c.45.1.1 59976 2cunA 410 81.87 2a1rA 430 81.96 2yvqA 143 82.49 2ax4A 198 82.54 1y0yA 353 83.22 b.49.3.1,c.56.5.4 122514,122515 1u8sA 192 84.48 d.58.18.5,d.58.18.5 107737,107738 1y56B 382 84.57 1j1nA 492 85.08 c.94.1.1 83978 3canA 182 85.27 2ppwA 216 85.54 2ehhA 294 85.93 1ho1A 242 87.19 c.1.24.1 61097 1ypxA 375 87.62 3brqA 296 87.96 1ad4A 266 88.79 c.1.21.1 29670 1ivnA 190 89.76 c.23.10.5 83719 2bdqA 224 89.82