# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.98e-30 c.56.5.6 90921 1xovA 326 6.52e-27 b.34.11.4,c.56.5.6 122206,122207 1ujnA 348 0.5535 e.22.1.1 99460 2h0aA 276 0.6149 1cg2A 393 0.8802 c.56.5.4,d.58.19.1 33844,39360 2i87A 364 1.372 3bijA 285 1.591 1iowA 306 2.161 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 2.890 e.22.1.2 67084 2rb7A 364 2.951 2dpiA 420 4.408 d.240.1.1,e.8.1.7 131612,131613 1vgyA 393 4.807 c.56.5.4,d.58.19.1 100620,100621 1yloA 348 5.010 b.49.3.1,c.56.5.4 123659,123660 1dnpA 471 5.173 a.99.1.1,c.28.1.1 18775,31630 2ef5A 290 5.211 1yqeA 282 5.955 c.56.7.1 123879 1gsa 316 6.850 1e4eA 343 6.865 c.30.1.2,d.142.1.1 59221,59222 1mldA 314 6.882 c.2.1.5,d.162.1.1 30122,42089 1ukz 203 8.349 1eg5A 384 9.182 c.67.1.3 34429 2irpA 208 10.30 1vljA 407 11.95 e.22.1.2 108832 1iow 306 12.14 2odtX 328 12.51 1k0wA 231 12.79 c.74.1.1 77220 1p5dX 463 13.09 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1nnfA 309 13.77 c.94.1.1 85903 3ce9A 354 14.08 1dv2A 452 14.29 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2qyvA 487 14.44 1dv1A 449 14.61 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2j0aA 280 14.71 1vhoA 346 15.15 b.49.3.1,c.56.5.4 100694,100695 1g67A 225 15.24 c.1.3.1 60311 3ct9A 356 16.17 2yrrA 353 16.22 1fnoA 417 16.23 d.58.19.1,c.56.5.4 70145,75841 1k2yX 463 17.99 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1uhvA 500 18.20 b.71.1.2,c.1.8.3 99402,99403 1ad2A 228 18.22 e.24.1.1 43353 1y0yA 353 20.68 b.49.3.1,c.56.5.4 122514,122515 1ye8A 178 20.83 c.37.1.11 123010 2fvgA 340 21.58 b.49.3.1,c.56.5.4 134201,134202 2pe3A 354 21.92 2vguA 407 22.30 3cpxA 321 22.42 1ccwA 137 24.04 c.23.6.1 31238 2q43A 418 24.58 c.56.5.4,d.58.19.1 139821,139822 1ytvA 366 25.15 c.94.1.1 124016 1wqaA 455 26.57 2r78A 117 26.85 2viaA 405 27.16 2f7lA 455 27.69 2alzA 390 27.93 d.240.1.1,e.8.1.7 126994,126995 1xjcA 169 28.19 c.37.1.10 115387 2z7bA 270 28.22 1o5kA 306 28.26 c.1.10.1 92504 2fuvA 549 28.42 1vheA 373 29.95 b.49.3.1,c.56.5.4 100669,100670 1byi 224 30.09 1hi9A 274 30.12 c.99.1.1 61063 1byiA 224 31.06 c.37.1.10 32199 1rrmA 386 31.20 e.22.1.2 105081 2q7dA 346 32.09 2ayyA 121 32.42 c.23.1.6 127576 4eugA 229 32.89 c.18.1.1 31019 1c0pA 363 32.99 c.4.1.2,d.16.1.3 30647,37934 4xis 387 33.07 1ra0A 430 33.22 b.92.1.2,c.1.9.5 111756,111757 3c3kA 285 34.48 1tca 317 34.83 2yutA 207 37.33 1ta9A 450 38.17 1muwA 386 38.41 c.1.15.3 79495 1ehiA 377 39.29 c.30.1.2,d.142.1.1 31716,41484 2qh8A 302 39.48 3xis 387 40.39 2z06A 252 41.40 2opiA 212 41.91 3b2yA 275 43.17 1dhpA 292 43.28 c.1.10.1 29097 2f1kA 279 43.63 a.100.1.12,c.2.1.6 132772,132773 2hjpA 290 43.81 2r91A 286 43.88 1xc1A 309 44.69 c.94.1.1 109543 1kjnA 157 45.20 c.115.1.1 72614 2ax4A 198 46.49 1hdoA 206 47.55 c.2.1.2 60965 1tuoA 464 47.97 2asfA 137 48.52 b.45.1.1 127253 2dr1A 386 48.81 2pcqA 283 49.47 2booA 247 49.88 1tfuA 157 50.28 c.26.1.3 106859 2hxmA 223 50.41 c.18.1.1 136857 1e4cP 215 51.04 c.74.1.1 34969 1g3qA 237 51.42 c.37.1.10 60237 1xfoA 357 52.39 b.49.3.1,c.56.5.4 115265,115266 1gsaA 316 52.51 c.30.1.3,d.142.1.1 31718,41477 2eayA 233 52.63 2z1mA 345 53.38 2hneA 436 53.46 1tezA 474 54.64 a.99.1.1,c.28.1.1 112409,112410 1cs1A 386 55.01 c.67.1.3 34399 2nuwA 288 55.63 1gq6A 313 56.50 c.42.1.1 70341 2eenA 183 56.59 2rghA 571 57.33 3cetA 334 58.63 1zbfA 142 58.74 c.55.3.1 124850 1o2dA 371 59.82 e.22.1.2 86591 2a5lA 200 60.02 c.23.5.8 126176 1tkjA 284 60.19 c.56.5.4 119296 2id1A 130 60.43 1anf 370 61.41 1lehA 364 61.42 c.2.1.7,c.58.1.1 30268,33916 1ng4A 390 62.90 c.3.1.2,d.16.1.3 85666,85667 1uslA 170 63.28 c.121.1.1 99871 1v9nA 360 64.08 1uc8A 280 64.37 c.30.1.6,d.142.1.7 99165,99166 2o4cA 380 64.71 1mrp 309 64.94 1o1xA 155 65.15 c.121.1.1 86553 3brqA 296 65.37 1laxA 370 65.53 c.94.1.1 84576 2j44A 217 66.99 1nal1 297 67.05 1id1A 153 68.64 c.2.1.9 62286 1x31B 404 70.70 1auk 489 71.16 2ehhA 294 71.30 2gh9A 386 71.31 3c5vA 316 71.42 1hl2A 297 71.74 c.1.10.1 83581 3b4uA 294 72.21 1sbp 310 72.68 2jejA 358 73.29 d.240.1.1,e.8.1.7 138284,138285 2rfgA 297 73.64 2iuyA 342 73.73 2yw2A 424 74.02 1xkyA 301 74.05 c.1.10.1 122094 1mrzA 293 74.25 b.43.5.1,c.26.1.3 91452,91453 2qv5A 261 74.57 1z2iA 358 75.31 1p0kA 349 75.68 c.1.4.1 87648 2a6nA 292 77.24 c.1.10.1 126289 1ys7A 233 77.45 a.4.6.1,c.23.1.1 123961,123962 2bjvA 265 78.52 2a6lA 292 78.57 c.1.10.1 126285 1omp 370 78.72 1hlgA 371 80.16 c.69.1.6 34656 1yeyA 444 80.91 c.1.11.2,d.54.1.1 116664,116665 1p3wA 404 81.39 c.67.1.3 87752 1el5A 389 81.92 c.3.1.2,d.16.1.3 30369,37937 2ghaA 382 82.05 2a67A 167 82.14 1np6A 174 82.69 c.37.1.10 85954 2dc4A 165 83.31 2yxbA 161 83.62 2o5aA 125 83.75 1jx4A 352 83.81 d.240.1.1,e.8.1.7 90378,90379 2ojpA 292 84.82 1bx4A 345 85.10 c.72.1.1 34935 1ad4A 266 85.25 c.1.21.1 29670 1qq9A 284 86.25 c.56.5.4 33841 1vecA 206 86.73 c.37.1.19 100575 1sbpA 310 86.98 c.94.1.1 35760 1mkiA 330 87.14 e.3.1.2 84994 1f74A 293 87.33 c.1.10.1 29079 2fncA 381 87.98 2bv9A 290 89.48 c.1.8.3 129242 1lssA 140 89.86 c.2.1.9 74246