# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.86e-29 c.56.5.6 90921 1xovA 326 3.75e-26 b.34.11.4,c.56.5.6 122206,122207 1ujnA 348 0.4719 e.22.1.1 99460 2h0aA 276 0.7952 3bijA 285 1.078 1cg2A 393 1.085 c.56.5.4,d.58.19.1 33844,39360 1jq5A 370 1.355 e.22.1.2 67084 2rb7A 364 1.954 2i87A 364 2.137 1iowA 306 3.681 c.30.1.2,d.142.1.1 31713,41481 1yloA 348 4.245 b.49.3.1,c.56.5.4 123659,123660 1vgyA 393 4.618 c.56.5.4,d.58.19.1 100620,100621 3ce9A 354 5.186 2ef5A 290 5.353 1dnpA 471 5.872 a.99.1.1,c.28.1.1 18775,31630 1gsa 316 6.358 2dpiA 420 6.825 d.240.1.1,e.8.1.7 131612,131613 1e4eA 343 6.857 c.30.1.2,d.142.1.1 59221,59222 1vhoA 346 7.382 b.49.3.1,c.56.5.4 100694,100695 3cpxA 321 7.897 1vljA 407 8.447 e.22.1.2 108832 1mldA 314 8.674 c.2.1.5,d.162.1.1 30122,42089 1yqeA 282 8.722 c.56.7.1 123879 1eg5A 384 10.20 c.67.1.3 34429 1dv1A 449 10.32 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1ukz 203 10.81 1y0yA 353 10.82 b.49.3.1,c.56.5.4 122514,122515 1g67A 225 11.39 c.1.3.1 60311 2pe3A 354 11.54 3ct9A 356 12.01 1p5dX 463 14.10 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2yrrA 353 14.66 1ta9A 450 14.75 1dv2A 452 15.39 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2z06A 252 17.43 1nnfA 309 17.54 c.94.1.1 85903 1uhvA 500 18.41 b.71.1.2,c.1.8.3 99402,99403 1ye8A 178 19.67 c.37.1.11 123010 1iow 306 20.03 1rrmA 386 20.10 e.22.1.2 105081 1k2yX 463 20.19 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1vheA 373 21.03 b.49.3.1,c.56.5.4 100669,100670 1ccwA 137 21.08 c.23.6.1 31238 1o5kA 306 21.17 c.1.10.1 92504 2j0aA 280 22.05 2fvgA 340 22.57 b.49.3.1,c.56.5.4 134201,134202 2odtX 328 23.39 2fuvA 549 23.56 2yutA 207 24.88 1tuoA 464 25.34 1fnoA 417 25.76 d.58.19.1,c.56.5.4 70145,75841 1hi9A 274 25.82 c.99.1.1 61063 2alzA 390 26.03 d.240.1.1,e.8.1.7 126994,126995 2hjpA 290 28.26 1xfoA 357 29.09 b.49.3.1,c.56.5.4 115265,115266 1byiA 224 29.19 c.37.1.10 32199 1ra0A 430 29.21 b.92.1.2,c.1.9.5 111756,111757 2irpA 208 29.89 1k0wA 231 30.27 c.74.1.1 77220 2qyvA 487 30.63 1byi 224 30.69 1gsaA 316 30.80 c.30.1.3,d.142.1.1 31718,41477 2f7lA 455 32.06 1xjcA 169 32.37 c.37.1.10 115387 1wqaA 455 32.52 1tca 317 32.94 4xis 387 33.06 4eugA 229 33.07 c.18.1.1 31019 1ytvA 366 33.47 c.94.1.1 124016 2r91A 286 34.91 2q43A 418 35.51 c.56.5.4,d.58.19.1 139821,139822 2vguA 407 37.31 3xis 387 37.31 2dr1A 386 38.14 1kjnA 157 38.59 c.115.1.1 72614 3c3kA 285 38.77 2qh8A 302 39.50 1muwA 386 40.44 c.1.15.3 79495 2viaA 405 41.09 1auk 489 41.28 1g3qA 237 41.92 c.37.1.10 60237 3cyjA 372 42.26 1tkjA 284 42.46 c.56.5.4 119296 1gq6A 313 42.55 c.42.1.1 70341 1pswA 348 42.62 c.87.1.7 88287 1c0pA 363 42.95 c.4.1.2,d.16.1.3 30647,37934 1ad2A 228 43.32 e.24.1.1 43353 1x31B 404 43.39 1ehiA 377 43.87 c.30.1.2,d.142.1.1 31716,41484 1o2dA 371 45.07 e.22.1.2 86591 1ys7A 233 45.32 a.4.6.1,c.23.1.1 123961,123962 2z1mA 345 45.75 1ng4A 390 45.92 c.3.1.2,d.16.1.3 85666,85667 1dhpA 292 46.43 c.1.10.1 29097 1p0kA 349 46.98 c.1.4.1 87648 2booA 247 47.02 3brqA 296 48.28 2qv5A 261 48.50 2ehhA 294 48.76 3b4uA 294 48.90 2pcqA 283 49.06 2ayyA 121 49.97 c.23.1.6 127576 2iuyA 342 50.25 2hxmA 223 50.37 c.18.1.1 136857 2rfgA 297 52.54 2f1kA 279 52.57 a.100.1.12,c.2.1.6 132772,132773 1kq3A 376 52.63 e.22.1.2 68790 1el5A 389 54.37 c.3.1.2,d.16.1.3 30369,37937 1j2rA 199 54.65 c.33.1.3 90788 1hdoA 206 55.13 c.2.1.2 60965 1uslA 170 56.34 c.121.1.1 99871 2ax4A 198 57.81 1o1xA 155 59.00 c.121.1.1 86553 1ycdA 243 59.24 1id1A 153 59.68 c.2.1.9 62286 1oc7A 364 60.02 c.6.1.1 86794 1eceA 358 60.03 c.1.8.3 28813 2nuwA 288 60.04 2q7dA 346 60.67 2ojpA 292 61.36 1tfuA 157 62.01 c.26.1.3 106859 2bv9A 290 63.17 c.1.8.3 129242 3c5vA 316 63.41 1zbfA 142 63.62 c.55.3.1 124850 1cs1A 386 63.67 c.67.1.3 34399 2o4cA 380 63.80 3b2yA 275 63.94 2a6nA 292 64.41 c.1.10.1 126289 2bjvA 265 64.68 1xc1A 309 66.08 c.94.1.1 109543 2hneA 436 67.88 1sbp 310 67.99 2yxbA 161 68.74 2a6lA 292 69.19 c.1.10.1 126285 2o3aA 178 69.40 1tezA 474 69.62 a.99.1.1,c.28.1.1 112409,112410 1udhA 244 69.78 c.18.1.1 31015 1uc8A 280 69.93 c.30.1.6,d.142.1.7 99165,99166 2z7bA 270 70.93 1xkyA 301 71.67 c.1.10.1 122094 1sbpA 310 72.26 c.94.1.1 35760 2o1sA 621 73.49 2a5lA 200 74.14 c.23.5.8 126176 1bx4A 345 74.76 c.72.1.1 34935 1qq9A 284 74.78 c.56.5.4 33841 2v3gA 283 75.86 2j44A 217 76.74 2q4zA 312 76.80 1amfA 233 77.25 c.94.1.1 35833 1mrzA 293 77.27 b.43.5.1,c.26.1.3 91452,91453 2eenA 183 78.81 1f74A 293 79.80 c.1.10.1 29079 1nal1 297 81.64 2id1A 130 81.90 2jejA 358 82.16 d.240.1.1,e.8.1.7 138284,138285 2dc4A 165 82.25 1laxA 370 82.60 c.94.1.1 84576 1hlgA 371 83.88 c.69.1.6 34656 2p97A 201 84.50 2a67A 167 85.13 1anf 370 85.15 2acaA 189 85.31 d.63.1.2 126545 1hyhA 309 85.55 c.2.1.5,d.162.1.1 30150,42117 1fuiA 591 85.74 b.43.2.1,c.85.1.1 25674,35444 3bh0A 315 85.91 1j8fA 323 87.05 c.31.1.5 62738 2gruA 368 87.20 2rghA 571 87.72 1hp1A 516 88.10 d.114.1.1,d.159.1.2 70976,70977 1ur5A 309 88.63 c.2.1.5,d.162.1.1 99807,99808 3cetA 334 88.83 2gh9A 386 89.06 2r78A 117 89.32 1vecA 206 89.39 c.37.1.19 100575 1mrp 309 89.39 2yw2A 424 89.68