# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 3.07e-29 c.56.5.6 90921 1xovA 326 9.05e-26 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.6427 1ujnA 348 0.9738 e.22.1.1 99460 3bijA 285 0.9946 1cg2A 393 1.133 c.56.5.4,d.58.19.1 33844,39360 2i87A 364 1.403 2rb7A 364 2.882 1iowA 306 2.980 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 3.286 e.22.1.2 67084 1vgyA 393 3.747 c.56.5.4,d.58.19.1 100620,100621 1e4eA 343 3.914 c.30.1.2,d.142.1.1 59221,59222 1yloA 348 4.871 b.49.3.1,c.56.5.4 123659,123660 2ef5A 290 6.404 1gsa 316 6.502 1vhoA 346 6.550 b.49.3.1,c.56.5.4 100694,100695 2dpiA 420 7.302 d.240.1.1,e.8.1.7 131612,131613 1mldA 314 7.665 c.2.1.5,d.162.1.1 30122,42089 1yqeA 282 8.209 c.56.7.1 123879 1dnpA 471 8.887 a.99.1.1,c.28.1.1 18775,31630 3cpxA 321 9.670 1y0yA 353 10.37 b.49.3.1,c.56.5.4 122514,122515 3ce9A 354 10.94 1dv2A 452 11.01 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1ukz 203 12.00 1g67A 225 12.21 c.1.3.1 60311 1eg5A 384 12.50 c.67.1.3 34429 1vljA 407 13.56 e.22.1.2 108832 1uhvA 500 14.76 b.71.1.2,c.1.8.3 99402,99403 2fvgA 340 14.91 b.49.3.1,c.56.5.4 134201,134202 1dv1A 449 14.92 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1byiA 224 16.57 c.37.1.10 32199 2pe3A 354 16.65 1o5kA 306 17.28 c.1.10.1 92504 1vheA 373 17.72 b.49.3.1,c.56.5.4 100669,100670 2odtX 328 17.91 1fnoA 417 18.20 d.58.19.1,c.56.5.4 70145,75841 1ra0A 430 18.52 b.92.1.2,c.1.9.5 111756,111757 1hi9A 274 18.63 c.99.1.1 61063 3ct9A 356 19.93 1iow 306 19.96 1nnfA 309 20.23 c.94.1.1 85903 2qyvA 487 20.39 1byi 224 20.69 2irpA 208 23.34 1ye8A 178 23.58 c.37.1.11 123010 1p5dX 463 23.63 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1xfoA 357 23.65 b.49.3.1,c.56.5.4 115265,115266 2j0aA 280 24.83 2yrrA 353 26.59 2q43A 418 27.67 c.56.5.4,d.58.19.1 139821,139822 2r91A 286 28.14 1ad2A 228 28.64 e.24.1.1 43353 1ccwA 137 28.81 c.23.6.1 31238 1xjcA 169 29.22 c.37.1.10 115387 1ytvA 366 29.81 c.94.1.1 124016 1k2yX 463 31.16 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1tca 317 31.87 1rrmA 386 32.58 e.22.1.2 105081 4eugA 229 32.97 c.18.1.1 31019 1ehiA 377 33.31 c.30.1.2,d.142.1.1 31716,41484 2alzA 390 33.71 d.240.1.1,e.8.1.7 126994,126995 1k0wA 231 33.76 c.74.1.1 77220 4xis 387 33.79 2z06A 252 33.98 1dhpA 292 35.25 c.1.10.1 29097 3c3kA 285 35.34 2hjpA 290 36.85 1tkjA 284 36.97 c.56.5.4 119296 2f7lA 455 38.21 1g3qA 237 38.34 c.37.1.10 60237 2fuvA 549 38.34 1gsaA 316 38.51 c.30.1.3,d.142.1.1 31718,41477 1tfuA 157 38.65 c.26.1.3 106859 1ta9A 450 38.67 2hxmA 223 38.96 c.18.1.1 136857 3xis 387 39.15 1c0pA 363 39.16 c.4.1.2,d.16.1.3 30647,37934 2yutA 207 39.40 1uslA 170 40.56 c.121.1.1 99871 1xkyA 301 42.05 c.1.10.1 122094 1muwA 386 42.06 c.1.15.3 79495 3cyjA 372 42.62 2pcqA 283 42.97 2vguA 407 43.29 1nal1 297 43.83 2ehhA 294 44.30 2nuwA 288 44.85 1wqaA 455 46.16 1o1xA 155 46.22 c.121.1.1 86553 2qh8A 302 46.70 2ayyA 121 46.74 c.23.1.6 127576 1kjnA 157 47.52 c.115.1.1 72614 1hl2A 297 47.62 c.1.10.1 83581 1o2dA 371 48.26 e.22.1.2 86591 2a5lA 200 49.43 c.23.5.8 126176 2viaA 405 50.01 2booA 247 50.02 2rfgA 297 51.96 2r78A 117 52.35 2dr1A 386 53.23 1auk 489 53.37 1tuoA 464 53.75 2eenA 183 54.58 2a6nA 292 54.81 c.1.10.1 126289 1gq6A 313 55.08 c.42.1.1 70341 1hdoA 206 56.07 c.2.1.2 60965 2hneA 436 56.29 2ojpA 292 57.14 2a6lA 292 58.87 c.1.10.1 126285 1laxA 370 59.50 c.94.1.1 84576 1uc8A 280 60.28 c.30.1.6,d.142.1.7 99165,99166 2qv5A 261 61.74 3b4uA 294 62.35 1f74A 293 62.43 c.1.10.1 29079 1el5A 389 63.20 c.3.1.2,d.16.1.3 30369,37937 1z2iA 358 63.71 1anf 370 64.34 2q7dA 346 64.55 1vkfA 188 64.61 c.1.29.1 108656 1vecA 206 64.65 c.37.1.19 100575 2z1mA 345 65.31 2bv9A 290 66.76 c.1.8.3 129242 3brqA 296 66.90 2z7bA 270 68.82 2j44A 217 69.20 1qq9A 284 69.46 c.56.5.4 33841 1qz9A 416 69.50 c.67.1.3 96621 1p0kA 349 69.57 c.1.4.1 87648 1x31B 404 71.22 2dc4A 165 71.47 2v8hA 474 71.49 1id1A 153 71.76 c.2.1.9 62286 1ivnA 190 72.05 c.23.10.5 83719 1oc7A 364 72.10 c.6.1.1 86794 1ng4A 390 72.42 c.3.1.2,d.16.1.3 85666,85667 3cetA 334 72.73 1tezA 474 72.99 a.99.1.1,c.28.1.1 112409,112410 1b1cA 181 73.40 c.23.5.2 31212 1np6A 174 74.19 c.37.1.10 85954 1qjcA 158 74.59 c.26.1.3 63328 2o1sA 621 75.15 2rghA 571 76.91 1j2rA 199 77.11 c.33.1.3 90788 1cs1A 386 77.16 c.67.1.3 34399 2qt3A 403 78.78 1xc1A 309 79.48 c.94.1.1 109543 5reqA 727 79.71 c.1.19.1,c.23.6.1 29632,31259 2dj5A 133 80.26 c.92.1.3 131536 2yxbA 161 81.82 2iuyA 342 82.35 3b2yA 275 82.73 2q4zA 312 83.13 2f1kA 279 83.31 a.100.1.12,c.2.1.6 132772,132773 2gh9A 386 83.58 1ja1A 622 84.00 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1sbpA 310 85.71 c.94.1.1 35760 1omp 370 87.52 3c5vA 316 87.59 1wdjA 187 87.71 c.52.1.27 114536 1sbp 310 89.40 1udhA 244 89.42 c.18.1.1 31015