# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 6.82e-27 c.56.5.6 90921 1xovA 326 5.65e-24 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.1989 2rb7A 364 0.7608 1iowA 306 1.042 c.30.1.2,d.142.1.1 31713,41481 2h0aA 276 1.061 3cpxA 321 1.922 1yloA 348 2.511 b.49.3.1,c.56.5.4 123659,123660 1ccwA 137 3.248 c.23.6.1 31238 1vljA 407 3.269 e.22.1.2 108832 2yxbA 161 3.571 1vgyA 393 4.989 c.56.5.4,d.58.19.1 100620,100621 1fnoA 417 5.351 d.58.19.1,c.56.5.4 70145,75841 1e4eA 343 5.860 c.30.1.2,d.142.1.1 59221,59222 1gsa 316 6.298 2dpiA 420 6.573 d.240.1.1,e.8.1.7 131612,131613 2eklA 313 6.905 2pe3A 354 6.966 1rrmA 386 7.009 e.22.1.2 105081 1cg2A 393 7.659 c.56.5.4,d.58.19.1 33844,39360 2ax4A 198 8.037 1kjnA 157 8.490 c.115.1.1 72614 2cukA 311 9.366 2fvgA 340 10.44 b.49.3.1,c.56.5.4 134201,134202 1iow 306 11.08 2oztA 332 11.21 2ef5A 290 11.38 1vhoA 346 11.84 b.49.3.1,c.56.5.4 100694,100695 1np6A 174 12.24 c.37.1.10 85954 2qs9A 194 14.30 2qh8A 302 14.37 2yutA 207 16.09 3c3kA 285 17.18 2i87A 364 18.59 2odtX 328 18.78 1xfoA 357 18.79 b.49.3.1,c.56.5.4 115265,115266 2g76A 335 19.07 1dv1A 449 19.18 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1xklA 273 19.32 c.69.1.20 115410 2alzA 390 20.07 d.240.1.1,e.8.1.7 126994,126995 2o20A 332 21.61 1vecA 206 21.83 c.37.1.19 100575 1o1xA 155 23.23 c.121.1.1 86553 3ce9A 354 23.85 1b1cA 181 24.20 c.23.5.2 31212 2q43A 418 24.47 c.56.5.4,d.58.19.1 139821,139822 3xis 387 26.29 2gcgA 330 27.70 2o4cA 380 27.80 1uc8A 280 31.75 c.30.1.6,d.142.1.7 99165,99166 1ycdA 243 32.21 1qycA 308 32.79 c.2.1.2 96581 1wcwA 261 33.04 1yasA 257 33.11 c.69.1.20 34801 3brqA 296 35.62 1uslA 170 35.72 c.121.1.1 99871 1dnpA 471 35.83 a.99.1.1,c.28.1.1 18775,31630 1g67A 225 35.85 c.1.3.1 60311 1c0pA 363 36.60 c.4.1.2,d.16.1.3 30647,37934 2z67A 456 38.01 1o2dA 371 38.36 e.22.1.2 86591 2yrrA 353 39.36 2yvqA 143 41.10 1y0yA 353 41.45 b.49.3.1,c.56.5.4 122514,122515 1gsaA 316 42.26 c.30.1.3,d.142.1.1 31718,41477 1xjo 284 42.33 1vd5A 377 42.51 a.102.1.7 108518 2driA 271 43.51 c.93.1.1 35637 1qq9A 284 44.24 c.56.5.4 33841 1uhvA 500 44.75 b.71.1.2,c.1.8.3 99402,99403 2i9iA 254 46.29 1ta9A 450 46.50 1uxoA 192 47.63 c.69.1.31 108121 1eyzA 392 48.09 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 4xis 387 48.60 1a88A 275 49.52 c.69.1.12 34707 2gmnA 274 49.91 2fcjA 119 50.06 c.136.1.1 133269 1u0tA 307 50.42 e.52.1.1 107567 3ct9A 356 50.62 1flcA 432 53.84 b.19.1.3,c.23.10.2 23837,31337 1nksA 194 55.75 c.37.1.1 31886 1ra0A 430 56.27 b.92.1.2,c.1.9.5 111756,111757 1jq5A 370 56.32 e.22.1.2 67084 1o5kA 306 57.54 c.1.10.1 92504 1xjcA 169 58.88 c.37.1.10 115387 2ar9A 278 60.37 1vmeA 410 61.14 c.23.5.1,d.157.1.3 108893,108894 1sg0A 230 61.36 c.23.5.3 118955 1s8nA 205 61.56 c.23.1.1 105374 1atgA 231 61.87 c.94.1.1 35834 1dhpA 292 62.99 c.1.10.1 29097 2fvkA 559 63.33 b.92.1.3,c.1.9.6 134204,134205 1z2lA 423 63.54 c.56.5.4,d.58.19.1 124383,124384 2d5vA 164 63.74 2rfgA 297 63.86 1tkjA 284 64.17 c.56.5.4 119296 2rghA 571 64.57 2j44A 217 67.41 1oj7A 408 67.63 e.22.1.2 103971 3cyjA 372 68.00 1lokA 291 68.77 c.56.5.4 78122 2qu7A 288 69.14 1muwA 386 69.50 c.1.15.3 79495 1w25A 459 69.95 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 1u2eA 289 70.02 1tqhA 247 71.13 c.69.1.29 107225 2pezA 179 72.15 1yzfA 195 72.98 c.23.10.5 124275 1sazA 381 73.14 c.55.1.2,c.55.1.2 118925,118926 2hqbA 296 73.58 2z1mA 345 74.41 1cs1A 386 75.32 c.67.1.3 34399 1dv2A 452 75.50 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 3bdvA 191 76.24 2ehhA 294 77.31 2a6nA 292 77.36 c.1.10.1 126289 2nuwA 288 77.39 2aebA 322 77.51 c.42.1.1 126617 1ede 310 79.44 2ioyA 283 83.58 1r1dA 247 83.81 c.69.1.29 96813 2dc4A 165 84.49 1oc7A 364 84.66 c.6.1.1 86794 1ru8A 232 85.02 c.26.2.1 97849 2p6wA 213 86.70 3bghA 236 87.11 2a6lA 292 87.24 c.1.10.1 126285 1f0kA 364 87.54 c.87.1.2 35465 2nu8B 388 89.85 1wohA 305 89.90 c.42.1.1 109446