# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.33e-31 c.56.5.6 90921 1xovA 326 4.05e-27 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.3715 3bijA 285 0.4442 1gsa 316 1.518 2i87A 364 1.527 1iowA 306 1.723 c.30.1.2,d.142.1.1 31713,41481 1e4eA 343 2.874 c.30.1.2,d.142.1.1 59221,59222 2odtX 328 2.968 3cpxA 321 3.283 2ef5A 290 3.931 1cg2A 393 5.176 c.56.5.4,d.58.19.1 33844,39360 1jq5A 370 5.198 e.22.1.2 67084 1yloA 348 6.494 b.49.3.1,c.56.5.4 123659,123660 2q7dA 346 7.128 2dpiA 420 7.563 d.240.1.1,e.8.1.7 131612,131613 1ujnA 348 7.746 e.22.1.1 99460 1vgyA 393 8.186 c.56.5.4,d.58.19.1 100620,100621 1k0wA 231 9.220 c.74.1.1 77220 1ccwA 137 9.268 c.23.6.1 31238 1iow 306 9.96 1vljA 407 12.71 e.22.1.2 108832 1byiA 224 12.72 c.37.1.10 32199 1g67A 225 12.86 c.1.3.1 60311 2irpA 208 13.69 1yqeA 282 13.80 c.56.7.1 123879 1dv1A 449 14.28 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3ce9A 354 14.30 1mldA 314 15.70 c.2.1.5,d.162.1.1 30122,42089 2rb7A 364 15.98 1vhoA 346 16.96 b.49.3.1,c.56.5.4 100694,100695 1gsaA 316 17.39 c.30.1.3,d.142.1.1 31718,41477 2rghA 571 17.87 1dnpA 471 18.75 a.99.1.1,c.28.1.1 18775,31630 2yutA 207 19.79 2eayA 233 19.88 3xis 387 20.80 1ad2A 228 21.19 e.24.1.1 43353 2fuvA 549 22.35 1g3qA 237 22.40 c.37.1.10 60237 2qt3A 403 22.69 1c0pA 363 22.86 c.4.1.2,d.16.1.3 30647,37934 1ye8A 178 23.33 c.37.1.11 123010 2fvgA 340 23.34 b.49.3.1,c.56.5.4 134201,134202 2dr1A 386 23.72 4xis 387 23.80 1k2yX 463 25.08 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1wqaA 455 25.59 1uc8A 280 26.09 c.30.1.6,d.142.1.7 99165,99166 1muwA 386 26.18 c.1.15.3 79495 2o3aA 178 26.27 2vguA 407 26.46 1p5dX 463 27.48 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1fnoA 417 27.97 d.58.19.1,c.56.5.4 70145,75841 1uhvA 500 28.39 b.71.1.2,c.1.8.3 99402,99403 2r78A 117 28.67 1hyhA 309 28.74 c.2.1.5,d.162.1.1 30150,42117 2a0mA 316 30.54 c.42.1.1 125960 1o5kA 306 30.85 c.1.10.1 92504 1byi 224 31.20 2bv9A 290 31.63 c.1.8.3 129242 2z7bA 270 31.69 2viaA 405 31.90 2f1kA 279 33.00 a.100.1.12,c.2.1.6 132772,132773 3c3kA 285 33.05 1y0yA 353 33.11 b.49.3.1,c.56.5.4 122514,122515 2j0aA 280 33.39 2pe3A 354 33.44 2opiA 212 33.49 1dv2A 452 33.63 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2ax4A 198 33.79 2f7lA 455 33.87 1rrmA 386 34.31 e.22.1.2 105081 1cs1A 386 35.76 c.67.1.3 34399 3cyjA 372 35.91 1kjnA 157 36.57 c.115.1.1 72614 1ytvA 366 36.68 c.94.1.1 124016 1nnfA 309 38.17 c.94.1.1 85903 2booA 247 38.95 1vheA 373 39.18 b.49.3.1,c.56.5.4 100669,100670 1i7nA 309 42.28 c.30.1.5,d.142.1.3 83681,83682 2r91A 286 42.55 1ra0A 430 43.03 b.92.1.2,c.1.9.5 111756,111757 1ja1A 622 43.21 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1mrzA 293 43.24 b.43.5.1,c.26.1.3 91452,91453 2nuwA 288 43.51 2q43A 418 44.00 c.56.5.4,d.58.19.1 139821,139822 1e4cP 215 44.43 c.74.1.1 34969 2j07A 420 45.35 a.99.1.1,c.28.1.1 137891,137892 2z08A 137 46.00 1xjcA 169 46.45 c.37.1.10 115387 1ukz 203 46.91 1auk 489 47.25 1el5A 389 47.80 c.3.1.2,d.16.1.3 30369,37937 2yw2A 424 49.08 1tca 317 49.15 1o2dA 371 49.73 e.22.1.2 86591 1sbp 310 53.25 1ad1A 266 53.74 c.1.21.1 29668 2yrrA 353 54.25 2qh8A 302 55.19 1hp1A 516 55.42 d.114.1.1,d.159.1.2 70976,70977 3b2yA 275 55.51 1ad4A 266 55.55 c.1.21.1 29670 1bx4A 345 55.61 c.72.1.1 34935 1laxA 370 55.63 c.94.1.1 84576 1pswA 348 55.73 c.87.1.7 88287 2yvqA 143 55.97 2pcqA 283 56.44 2rfgA 297 56.62 2pfsA 150 57.05 1uslA 170 57.30 c.121.1.1 99871 1xkyA 301 57.32 c.1.10.1 122094 2yxbA 161 57.48 2hjpA 290 58.45 1y44A 320 58.69 d.157.1.7 122608 1o1xA 155 60.25 c.121.1.1 86553 2jejA 358 60.32 d.240.1.1,e.8.1.7 138284,138285 1b6rA 355 61.26 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1id1A 153 61.57 c.2.1.9 62286 1eg5A 384 61.71 c.67.1.3 34429 2qyvA 487 62.24 1bg6A 359 62.28 a.100.1.5,c.2.1.6 18810,30214 2alzA 390 63.06 d.240.1.1,e.8.1.7 126994,126995 1omp 370 63.49 2z1mA 345 64.12 1tuoA 464 64.74 1z2iA 358 65.23 2cukA 311 66.82 2ehhA 294 67.25 1lehA 364 67.80 c.2.1.7,c.58.1.1 30268,33916 1hi9A 274 68.53 c.99.1.1 61063 1hdoA 206 69.25 c.2.1.2 60965 1sbpA 310 69.80 c.94.1.1 35760 1f0kA 364 70.10 c.87.1.2 35465 2hxmA 223 71.01 c.18.1.1 136857 1yadA 221 71.45 1xfoA 357 71.52 b.49.3.1,c.56.5.4 115265,115266 3b4uA 294 72.10 1anf 370 73.17 1pvtA 238 73.42 c.74.1.1 95189 2bjvA 265 75.31 1gq6A 313 76.40 c.42.1.1 70341 1ty9A 222 76.41 b.45.1.1 112827 1np6A 174 76.74 c.37.1.10 85954 1ldg 316 77.16 5reqA 727 77.55 c.1.19.1,c.23.6.1 29632,31259 1jx4A 352 79.65 d.240.1.1,e.8.1.7 90378,90379 2dc4A 165 79.88 2fiuA 99 80.72 d.58.4.16 133537 1ehiA 377 81.24 c.30.1.2,d.142.1.1 31716,41484 1cs0A 1073 81.30 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1zuwA 272 82.02 1v9nA 360 82.17 2nu8B 388 83.30 1k20A 310 83.52 c.107.1.1 68027 1lt3A 240 84.44 d.166.1.1 42230 1wjgA 137 84.90 c.26.2.4 114696 1dbqA 289 85.11 c.93.1.1 35666 1gqiA 708 85.33 c.1.8.10,d.92.2.2 76279,76280 3brqA 296 85.56 1u0tA 307 85.91 e.52.1.1 107567 2eenA 183 86.33 3bilA 348 87.34