# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.28e-23 c.56.5.6 90921 1xovA 326 4.08e-20 b.34.11.4,c.56.5.6 122206,122207 2i87A 364 1.763 1o7tA 309 1.794 c.94.1.1 86645 1cs1A 386 3.428 c.67.1.3 34399 1eg5A 384 4.046 c.67.1.3 34429 2dr1A 386 4.111 3bijA 285 4.321 4xis 387 4.876 1o12A 376 5.205 b.92.1.5,c.1.9.10 80758,80759 3bh1A 507 5.538 1x7yA 400 5.989 c.36.1.11 114944 1xfoA 357 6.306 b.49.3.1,c.56.5.4 115265,115266 1k0wA 231 6.444 c.74.1.1 77220 2h0aA 276 7.280 1xc1A 309 7.322 c.94.1.1 109543 1p1mA 406 8.083 b.92.1.4,c.1.9.9 87696,87697 1wyuA 438 8.294 c.67.1.7 121452 1ta9A 450 8.475 1jx4A 352 9.054 d.240.1.1,e.8.1.7 90378,90379 1yloA 348 9.245 b.49.3.1,c.56.5.4 123659,123660 1qwgA 251 9.483 c.1.27.1 96473 1gsa 316 9.552 1uhvA 500 10.67 b.71.1.2,c.1.8.3 99402,99403 2pgeA 377 11.59 3xis 387 12.83 1kdgA 546 13.57 c.3.1.2,d.16.1.1 77337,77338 1e4eA 343 14.80 c.30.1.2,d.142.1.1 59221,59222 1vhoA 346 15.17 b.49.3.1,c.56.5.4 100694,100695 1muwA 386 15.79 c.1.15.3 79495 1rqbA 539 17.01 a.5.7.2,c.1.10.5 105057,105058 2hjpA 290 17.60 2q7dA 346 17.90 2zivB 351 18.56 1auk 489 19.02 2viaA 405 19.50 2bs9A 503 19.77 b.71.1.2,c.1.8.3 129062,129063 1vheA 373 20.17 b.49.3.1,c.56.5.4 100669,100670 2z1qA 577 21.33 1ad1A 266 21.37 c.1.21.1 29668 1iowA 306 22.93 c.30.1.2,d.142.1.1 31713,41481 1iow 306 24.54 2odtX 328 24.72 2o1sA 621 26.61 2v8hA 474 27.31 1dv1A 449 27.58 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2z7bA 270 28.40 1amp 291 31.53 1byiA 224 31.77 c.37.1.10 32199 1xkyA 301 32.60 c.1.10.1 122094 1g67A 225 33.51 c.1.3.1 60311 3ce9A 354 33.65 1id1A 153 36.73 c.2.1.9 62286 1uc8A 280 36.88 c.30.1.6,d.142.1.7 99165,99166 2i9iA 254 37.37 1ccwA 137 38.19 c.23.6.1 31238 1byi 224 38.31 1oywA 523 38.97 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1cs0A 1073 39.11 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1vljA 407 39.26 e.22.1.2 108832 1ps9A 671 39.66 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2iuyA 342 39.96 2pcqA 283 40.19 1gq6A 313 40.73 c.42.1.1 70341 2gu2A 312 41.50 1g3qA 237 41.52 c.37.1.10 60237 1lt8A 406 41.89 c.1.26.1 78186 1jq5A 370 42.58 e.22.1.2 67084 2dpiA 420 43.47 d.240.1.1,e.8.1.7 131612,131613 1wohA 305 43.63 c.42.1.1 109446 1sw5B 275 45.66 c.94.1.1 106070 2ef5A 290 45.66 2a84A 300 45.97 c.26.1.4 126389 2yrrA 353 47.01 1k20A 310 47.55 c.107.1.1 68027 1ehiA 377 47.60 c.30.1.2,d.142.1.1 31716,41484 1q7zA 566 48.05 c.1.21.2,c.1.26.1 96090,96091 1l5oA 356 48.30 c.39.1.1 77711 2eb0A 307 48.56 2e3jA 356 49.89 2vguA 407 50.58 1e4cP 215 51.12 c.74.1.1 34969 2eq5A 228 51.23 1lucB 324 52.88 c.1.16.1 29548 2bfgA 503 54.08 b.71.1.2,c.1.8.3 128423,128424 2aebA 322 55.03 c.42.1.1 126617 1sw2A 275 55.74 c.94.1.1 106064 3b4uA 294 56.06 1d3vA 323 56.39 c.42.1.1 32559 2jfnA 285 56.77 1gsaA 316 57.48 c.30.1.3,d.142.1.1 31718,41477 2b5tI 432 61.68 e.1.1.1 127905 1k8tA 510 62.43 e.41.1.1 68316 3cniA 156 62.75 3cpxA 321 63.02 2cw6A 298 63.71 2z06A 252 63.79 2qj8A 332 64.12 2o3aA 178 64.56 1kwmA 402 65.81 c.56.5.1,d.58.3.1 73079,73080 2ax4A 198 66.42 1xhcA 367 66.60 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1qnf 484 67.21 1bx4A 345 68.57 c.72.1.1 34935 1yadA 221 69.29 2b81A 323 70.27 2r98A 456 70.66 1e9lA 377 71.98 c.1.8.5,d.26.3.1 59395,59396 2bcoA 350 72.54 c.56.5.7 128302 1rm6A 769 73.01 d.41.1.1,d.133.1.1 111872,111873 2rb7A 364 73.10 1o5kA 306 73.62 c.1.10.1 92504 2yutA 207 75.14 2fvgA 340 75.26 b.49.3.1,c.56.5.4 134201,134202 1v1rA 400 75.63 c.36.1.11 108272 2r91A 286 77.18 1nbwA 607 77.83 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2pgnA 589 78.12 2r78A 117 78.54 1gsoA 431 79.02 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2fp4B 395 79.51 c.23.4.1,d.142.1.4 133897,133898 1ni4A 365 81.23 c.36.1.11 85728 1reqA 727 81.52 c.1.19.1,c.23.6.1 29620,31247 1u3dA 509 82.08 a.99.1.1,c.28.1.1 107638,107639 1mldA 314 82.27 c.2.1.5,d.162.1.1 30122,42089 2qh8A 302 82.88 2j0aA 280 83.23 2rebA 352 84.72 c.37.1.11,d.48.1.1 32282,38767 1yp2A 451 85.34 b.81.1.4,c.68.1.6 123798,123799 1kjnA 157 85.41 c.115.1.1 72614 2v3gA 283 86.12 1q0rA 298 87.87 c.69.1.28 95508