# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 5.28e-31 c.56.5.6 90921 1xovA 326 6.14e-27 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.3462 2h0aA 276 0.4213 2i87A 364 1.572 1gsa 316 1.761 1iowA 306 1.987 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 2.128 e.22.1.2 67084 1ujnA 348 2.939 e.22.1.1 99460 3cpxA 321 3.047 2ef5A 290 3.075 1e4eA 343 4.677 c.30.1.2,d.142.1.1 59221,59222 1cg2A 393 4.899 c.56.5.4,d.58.19.1 33844,39360 2odtX 328 5.969 3ce9A 354 7.087 1yloA 348 7.389 b.49.3.1,c.56.5.4 123659,123660 1dv1A 449 8.855 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1g67A 225 9.99 c.1.3.1 60311 1vgyA 393 10.58 c.56.5.4,d.58.19.1 100620,100621 1muwA 386 10.63 c.1.15.3 79495 1byiA 224 11.93 c.37.1.10 32199 1ccwA 137 12.23 c.23.6.1 31238 1vljA 407 12.75 e.22.1.2 108832 3cyjA 372 13.38 2rb7A 364 13.50 1iow 306 13.74 2yutA 207 13.79 1vhoA 346 13.90 b.49.3.1,c.56.5.4 100694,100695 2dpiA 420 14.22 d.240.1.1,e.8.1.7 131612,131613 1dnpA 471 14.38 a.99.1.1,c.28.1.1 18775,31630 1yqeA 282 14.79 c.56.7.1 123879 2rghA 571 14.93 1mldA 314 15.68 c.2.1.5,d.162.1.1 30122,42089 2a0mA 316 15.72 c.42.1.1 125960 1cs1A 386 17.31 c.67.1.3 34399 1g3qA 237 17.48 c.37.1.10 60237 2q7dA 346 17.79 2o3aA 178 18.25 2bv9A 290 18.35 c.1.8.3 129242 1k0wA 231 18.51 c.74.1.1 77220 2r91A 286 18.56 1gsaA 316 18.74 c.30.1.3,d.142.1.1 31718,41477 3xis 387 18.77 2dr1A 386 18.95 2vguA 407 20.43 4xis 387 20.44 1ye8A 178 21.95 c.37.1.11 123010 1o5kA 306 22.26 c.1.10.1 92504 1mrzA 293 22.55 b.43.5.1,c.26.1.3 91452,91453 1c0pA 363 22.91 c.4.1.2,d.16.1.3 30647,37934 1hyhA 309 23.29 c.2.1.5,d.162.1.1 30150,42117 2fvgA 340 24.09 b.49.3.1,c.56.5.4 134201,134202 1k2yX 463 24.37 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2viaA 405 24.62 1yadA 221 25.75 1tuoA 464 26.97 1nnfA 309 27.01 c.94.1.1 85903 2fuvA 549 27.52 1ad4A 266 27.57 c.1.21.1 29670 2nuwA 288 27.63 2ax4A 198 28.17 2hjpA 290 28.40 1p5dX 463 29.64 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1byi 224 29.70 2z08A 137 30.25 3c3kA 285 30.37 1auk 489 30.77 1rrmA 386 31.59 e.22.1.2 105081 2qt3A 403 31.76 2z1mA 345 32.26 1el5A 389 32.27 c.3.1.2,d.16.1.3 30369,37937 2j0aA 280 32.37 1tca 317 33.24 2j07A 420 33.36 a.99.1.1,c.28.1.1 137891,137892 2qh8A 302 33.48 2pfsA 150 34.11 2ehhA 294 34.53 1wqaA 455 34.67 2yrrA 353 34.74 1o2dA 371 34.91 e.22.1.2 86591 1ra0A 430 35.20 b.92.1.2,c.1.9.5 111756,111757 2qyvA 487 35.41 1uc8A 280 37.21 c.30.1.6,d.142.1.7 99165,99166 1y0yA 353 37.36 b.49.3.1,c.56.5.4 122514,122515 2bjvA 265 37.43 2q43A 418 37.51 c.56.5.4,d.58.19.1 139821,139822 2rfgA 297 37.80 1vheA 373 37.92 b.49.3.1,c.56.5.4 100669,100670 1pswA 348 37.99 c.87.1.7 88287 1fnoA 417 38.06 d.58.19.1,c.56.5.4 70145,75841 1ukz 203 38.97 1uhvA 500 39.32 b.71.1.2,c.1.8.3 99402,99403 1ad1A 266 39.95 c.1.21.1 29668 1tfuA 157 40.36 c.26.1.3 106859 1ta9A 450 41.29 2pcqA 283 41.92 2f7lA 455 43.15 1id1A 153 44.26 c.2.1.9 62286 2f1kA 279 44.38 a.100.1.12,c.2.1.6 132772,132773 1xkyA 301 44.40 c.1.10.1 122094 1kjnA 157 45.25 c.115.1.1 72614 1uslA 170 46.56 c.121.1.1 99871 1gq6A 313 46.56 c.42.1.1 70341 1eg5A 384 46.69 c.67.1.3 34429 2booA 247 47.34 2irpA 208 47.92 3b4uA 294 48.03 1ytvA 366 48.84 c.94.1.1 124016 1ur5A 309 48.93 c.2.1.5,d.162.1.1 99807,99808 2yxbA 161 50.63 1dv2A 452 50.68 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2cukA 311 51.23 2aebA 322 52.44 c.42.1.1 126617 1ldg 316 52.57 2pe3A 354 52.68 1gudA 288 53.11 c.93.1.1 83326 1f0kA 364 54.75 c.87.1.2 35465 1o1xA 155 56.52 c.121.1.1 86553 1bx4A 345 58.37 c.72.1.1 34935 1z2iA 358 58.59 1bg6A 359 58.66 a.100.1.5,c.2.1.6 18810,30214 1qjcA 158 59.29 c.26.1.3 63328 1kq3A 376 61.40 e.22.1.2 68790 1wjgA 137 61.61 c.26.2.4 114696 2yvqA 143 63.60 1sbp 310 64.89 3brqA 296 64.92 1hp1A 516 65.19 d.114.1.1,d.159.1.2 70976,70977 1hdoA 206 65.54 c.2.1.2 60965 1sbpA 310 65.90 c.94.1.1 35760 2hxmA 223 70.03 c.18.1.1 136857 1ja1A 622 72.00 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1qz9A 416 72.74 c.67.1.3 96621 1laxA 370 73.10 c.94.1.1 84576 2z06A 252 74.02 1np6A 174 74.19 c.37.1.10 85954 2z7bA 270 74.55 2fssA 365 76.09 1omp 370 76.71 2alzA 390 76.81 d.240.1.1,e.8.1.7 126994,126995 1anf 370 77.08 1xjcA 169 78.19 c.37.1.10 115387 1eyeA 280 78.25 c.1.21.1 29672 2pr7A 137 78.90 1hi9A 274 79.68 c.99.1.1 61063 1ehiA 377 79.91 c.30.1.2,d.142.1.1 31716,41484 1cs0A 1073 80.65 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 8abp 306 80.69 2yw2A 424 81.92 1va4A 279 81.92 c.69.1.12 108458 2jmpA 107 82.39 1t3iA 420 84.02 c.67.1.3 106354 1p0kA 349 85.90 c.1.4.1 87648 2hqbA 296 86.56 1xfoA 357 86.85 b.49.3.1,c.56.5.4 115265,115266 2qulA 290 86.87 2v3gA 283 87.01 1hl2A 297 87.70 c.1.10.1 83581 2r78A 117 88.29 2dc4A 165 88.40 1aj2A 282 89.66 c.1.21.1 29665