# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.35e-30 c.56.5.6 90921 1xovA 326 1.28e-26 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.8083 3bijA 285 0.9733 1ujnA 348 1.931 e.22.1.1 99460 2i87A 364 2.961 1e4eA 343 3.001 c.30.1.2,d.142.1.1 59221,59222 1gsa 316 3.683 1iowA 306 4.638 c.30.1.2,d.142.1.1 31713,41481 1jq5A 370 4.817 e.22.1.2 67084 3ce9A 354 5.490 2dpiA 420 6.261 d.240.1.1,e.8.1.7 131612,131613 1yloA 348 7.538 b.49.3.1,c.56.5.4 123659,123660 1vljA 407 8.079 e.22.1.2 108832 1dnpA 471 9.005 a.99.1.1,c.28.1.1 18775,31630 1k0wA 231 9.025 c.74.1.1 77220 2odtX 328 10.12 1g67A 225 11.11 c.1.3.1 60311 3cpxA 321 11.35 1vhoA 346 11.82 b.49.3.1,c.56.5.4 100694,100695 2ef5A 290 14.56 2f4qA 346 16.15 2pe3A 354 16.26 1dv2A 452 17.90 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1rrmA 386 18.03 e.22.1.2 105081 1ra0A 430 18.48 b.92.1.2,c.1.9.5 111756,111757 1ta9A 450 18.51 1uhvA 500 18.64 b.71.1.2,c.1.8.3 99402,99403 1mldA 314 18.68 c.2.1.5,d.162.1.1 30122,42089 1fuiA 591 19.64 b.43.2.1,c.85.1.1 25674,35444 1eg5A 384 19.66 c.67.1.3 34429 1ccwA 137 19.81 c.23.6.1 31238 1c0pA 363 20.54 c.4.1.2,d.16.1.3 30647,37934 1y0yA 353 20.96 b.49.3.1,c.56.5.4 122514,122515 1jx4A 352 22.56 d.240.1.1,e.8.1.7 90378,90379 2yrrA 353 23.67 1muwA 386 24.98 c.1.15.3 79495 1dv1A 449 25.09 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1cg2A 393 25.31 c.56.5.4,d.58.19.1 33844,39360 1nb9A 147 26.22 b.43.5.1 85515 2q7dA 346 26.24 1vgyA 393 26.47 c.56.5.4,d.58.19.1 100620,100621 2dr1A 386 27.74 2jejA 358 28.02 d.240.1.1,e.8.1.7 138284,138285 1o5kA 306 28.06 c.1.10.1 92504 1nnfA 309 29.25 c.94.1.1 85903 2r91A 286 29.41 2z7bA 270 29.80 2irpA 208 30.00 1hi9A 274 30.45 c.99.1.1 61063 1ad4A 266 31.43 c.1.21.1 29670 1tca 317 31.58 1kq3A 376 31.63 e.22.1.2 68790 3b2yA 275 31.68 2fvgA 340 32.00 b.49.3.1,c.56.5.4 134201,134202 2j0aA 280 32.07 2booA 247 32.15 2nuwA 288 32.27 1xfoA 357 32.32 b.49.3.1,c.56.5.4 115265,115266 1tfuA 157 33.24 c.26.1.3 106859 1fnoA 417 33.41 d.58.19.1,c.56.5.4 70145,75841 1yqeA 282 33.62 c.56.7.1 123879 5reqA 727 34.01 c.1.19.1,c.23.6.1 29632,31259 1gsaA 316 34.12 c.30.1.3,d.142.1.1 31718,41477 2rb7A 364 34.38 2i5eA 211 34.55 2a1rA 430 36.46 2rghA 571 36.73 1o2dA 371 37.66 e.22.1.2 86591 2pcqA 283 38.63 1hyhA 309 38.84 c.2.1.5,d.162.1.1 30150,42117 1cs1A 386 40.29 c.67.1.3 34399 1ehiA 377 40.44 c.30.1.2,d.142.1.1 31716,41484 2qh8A 302 42.05 2hxmA 223 42.14 c.18.1.1 136857 2ayyA 121 42.49 c.23.1.6 127576 2eayA 233 42.87 2qt3A 403 43.29 2bv9A 290 45.24 c.1.8.3 129242 2z06A 252 45.30 2r78A 117 47.76 2ehhA 294 47.81 1byiA 224 48.91 c.37.1.10 32199 2rfgA 297 50.65 1ad2A 228 51.11 e.24.1.1 43353 1vheA 373 51.16 b.49.3.1,c.56.5.4 100669,100670 1e7lA 157 52.74 a.140.4.1,d.4.1.5 64728,64729 1oj4A 283 55.30 d.14.1.5,d.58.26.5 93083,93084 2ojpA 292 55.61 1o12A 376 55.74 b.92.1.5,c.1.9.10 80758,80759 2fvkA 559 57.02 b.92.1.3,c.1.9.6 134204,134205 1ty9A 222 57.13 b.45.1.1 112827 2bjvA 265 57.74 4eugA 229 58.37 c.18.1.1 31019 1dhpA 292 58.94 c.1.10.1 29097 1xkyA 301 59.71 c.1.10.1 122094 2vguA 407 60.54 2opiA 212 61.08 2cukA 311 61.36 2yutA 207 61.41 1gq6A 313 62.46 c.42.1.1 70341 3cyjA 372 62.55 2eenA 183 62.90 3c3kA 285 63.83 1xc1A 309 64.42 c.94.1.1 109543 1anf 370 64.44 1lehA 364 64.68 c.2.1.7,c.58.1.1 30268,33916 3cdxA 354 66.67 1bx4A 345 66.82 c.72.1.1 34935 2q43A 418 67.55 c.56.5.4,d.58.19.1 139821,139822 2dc4A 165 67.70 2fiuA 99 68.23 d.58.4.16 133537 1hlgA 371 69.31 c.69.1.6 34656 2acaA 189 69.71 d.63.1.2 126545 2alzA 390 71.88 d.240.1.1,e.8.1.7 126994,126995 1byi 224 72.11 1j8fA 323 73.60 c.31.1.5 62738 2v3gA 283 74.16 1p3y1 194 74.45 1ycdA 243 74.85 2a6lA 292 74.88 c.1.10.1 126285 2f1kA 279 75.41 a.100.1.12,c.2.1.6 132772,132773 2q4zA 312 75.80 1p5dX 463 76.00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fssA 365 76.32 1fpzA 212 76.36 c.45.1.1 59976 1y44A 320 76.63 d.157.1.7 122608 3xis 387 77.35 2hjpA 290 77.63 2nu8B 388 77.76 1mrp 309 77.78 2jmpA 107 78.26 1nal1 297 78.34 1ye8A 178 79.36 c.37.1.11 123010 1qjcA 158 79.62 c.26.1.3 63328 3b34A 891 81.84 1g3qA 237 82.10 c.37.1.10 60237 3bh0A 315 82.12 2o3aA 178 84.28 2rauA 354 84.42 2yxbA 161 84.67 2v9dA 343 85.19 1uslA 170 85.34 c.121.1.1 99871 2fuvA 549 85.43 2viaA 405 85.59 1np6A 174 86.10 c.37.1.10 85954 2o4cA 380 86.32 3b4uA 294 86.77 1n08A 163 89.63 b.43.5.1 79730 1hl2A 297 89.96 c.1.10.1 83581