# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 7.80e-31 c.56.5.6 90921 1xovA 326 5.09e-27 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.7499 2h0aA 276 1.148 1gsa 316 1.938 1iowA 306 2.514 c.30.1.2,d.142.1.1 31713,41481 2dpiA 420 2.623 d.240.1.1,e.8.1.7 131612,131613 1ujnA 348 2.665 e.22.1.1 99460 1jq5A 370 3.285 e.22.1.2 67084 2odtX 328 4.486 1dv1A 449 4.548 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1dnpA 471 5.183 a.99.1.1,c.28.1.1 18775,31630 2i87A 364 5.212 1dv2A 452 5.718 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2q7dA 346 5.961 1yloA 348 6.504 b.49.3.1,c.56.5.4 123659,123660 1vljA 407 7.389 e.22.1.2 108832 1nnfA 309 8.128 c.94.1.1 85903 3ce9A 354 9.019 1cg2A 393 10.39 c.56.5.4,d.58.19.1 33844,39360 1iow 306 11.19 1rrmA 386 11.27 e.22.1.2 105081 1g67A 225 11.34 c.1.3.1 60311 3cpxA 321 11.68 1vgyA 393 12.89 c.56.5.4,d.58.19.1 100620,100621 1o5kA 306 13.34 c.1.10.1 92504 1k0wA 231 14.96 c.74.1.1 77220 2ef5A 290 15.22 1vhoA 346 16.44 b.49.3.1,c.56.5.4 100694,100695 1mldA 314 18.06 c.2.1.5,d.162.1.1 30122,42089 2rb7A 364 19.55 1byiA 224 20.79 c.37.1.10 32199 1byi 224 21.16 2bjvA 265 22.12 2j0aA 280 22.52 1anf 370 23.03 1ta9A 450 23.13 1e4eA 343 23.78 c.30.1.2,d.142.1.1 59221,59222 1ytvA 366 23.82 c.94.1.1 124016 2fuvA 549 24.43 2dr1A 386 25.15 1g3qA 237 25.23 c.37.1.10 60237 2pe3A 354 26.52 1gsaA 316 26.61 c.30.1.3,d.142.1.1 31718,41477 1fnoA 417 26.65 d.58.19.1,c.56.5.4 70145,75841 1eg5A 384 26.83 c.67.1.3 34429 2r91A 286 28.47 1gq6A 313 29.58 c.42.1.1 70341 1ccwA 137 30.02 c.23.6.1 31238 2f4qA 346 30.68 1x31B 404 31.46 1ra0A 430 31.52 b.92.1.2,c.1.9.5 111756,111757 2cukA 311 32.11 1tca 317 32.13 3c3kA 285 33.40 1xkyA 301 33.60 c.1.10.1 122094 1v9nA 360 34.03 2qh8A 302 34.08 2jejA 358 34.82 d.240.1.1,e.8.1.7 138284,138285 1nb9A 147 34.98 b.43.5.1 85515 1omp 370 35.27 2qyvA 487 35.32 2rfgA 297 35.82 1y0yA 353 35.84 b.49.3.1,c.56.5.4 122514,122515 1xjcA 169 36.49 c.37.1.10 115387 1kq3A 376 36.98 e.22.1.2 68790 2nuwA 288 37.00 2alzA 390 37.58 d.240.1.1,e.8.1.7 126994,126995 2ehhA 294 37.58 2hxmA 223 37.91 c.18.1.1 136857 1ja1A 622 38.74 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2yutA 207 39.64 2fiuA 99 40.30 d.58.4.16 133537 1y4tA 322 40.97 c.94.1.1 116464 1ad2A 228 41.16 e.24.1.1 43353 1vheA 373 41.27 b.49.3.1,c.56.5.4 100669,100670 1xfoA 357 42.61 b.49.3.1,c.56.5.4 115265,115266 1lssA 140 43.01 c.2.1.9 74246 3ct9A 356 43.20 1laxA 370 43.69 c.94.1.1 84576 3cyjA 372 44.14 1uhvA 500 44.56 b.71.1.2,c.1.8.3 99402,99403 1dhpA 292 44.79 c.1.10.1 29097 1f74A 293 44.86 c.1.10.1 29079 1ycdA 243 44.93 2o4cA 380 45.60 1hl2A 297 45.84 c.1.10.1 83581 1jx4A 352 46.54 d.240.1.1,e.8.1.7 90378,90379 1ye8A 178 46.99 c.37.1.11 123010 2f1kA 279 48.66 a.100.1.12,c.2.1.6 132772,132773 1hlgA 371 48.80 c.69.1.6 34656 4eugA 229 49.77 c.18.1.1 31019 2fvgA 340 49.94 b.49.3.1,c.56.5.4 134201,134202 1cs1A 386 50.80 c.67.1.3 34399 2pcqA 283 51.04 1nal1 297 51.37 1oj4A 283 51.68 d.14.1.5,d.58.26.5 93083,93084 2booA 247 52.71 2j07A 420 54.08 a.99.1.1,c.28.1.1 137891,137892 1np6A 174 54.25 c.37.1.10 85954 1hyhA 309 55.00 c.2.1.5,d.162.1.1 30150,42117 1qk8A 146 55.93 c.47.1.10 33061 2e7jA 371 56.54 4mbp 370 56.63 1e7lA 157 57.10 a.140.4.1,d.4.1.5 64728,64729 1hdoA 206 58.22 c.2.1.2 60965 2eenA 183 58.79 1wqaA 455 60.42 1xc1A 309 60.74 c.94.1.1 109543 1tfuA 157 61.68 c.26.1.3 106859 3cetA 334 62.00 1lehA 364 63.70 c.2.1.7,c.58.1.1 30268,33916 2bv9A 290 63.92 c.1.8.3 129242 1yqeA 282 64.18 c.56.7.1 123879 1z2iA 358 64.32 1t3iA 420 65.00 c.67.1.3 106354 2yxbA 161 66.16 1q35A 320 66.36 c.94.1.1 95661 3b4uA 294 66.93 1hs6A 611 67.33 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1u3dA 509 67.72 a.99.1.1,c.28.1.1 107638,107639 1ukz 203 69.23 1sbpA 310 69.36 c.94.1.1 35760 2q43A 418 69.49 c.56.5.4,d.58.19.1 139821,139822 2eayA 233 70.03 2rghA 571 70.81 2o20A 332 71.07 2r78A 117 71.15 2yvqA 143 72.25 1uc8A 280 73.57 c.30.1.6,d.142.1.7 99165,99166 1wcwA 261 73.95 5reqA 727 74.64 c.1.19.1,c.23.6.1 29632,31259 1uslA 170 74.90 c.121.1.1 99871 2cp8A 54 74.95 a.5.2.1 130695 1sbp 310 75.50 1muwA 386 75.54 c.1.15.3 79495 1c0pA 363 75.96 c.4.1.2,d.16.1.3 30647,37934 1mrp 309 77.46 2yrrA 353 79.48 2z7bA 270 79.61 1p5dX 463 79.93 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2ojpA 292 80.28 1o2dA 371 80.78 e.22.1.2 86591 1bg6A 359 80.92 a.100.1.5,c.2.1.6 18810,30214 1xmxA 385 81.30 c.52.1.26 115568 1ehiA 377 82.05 c.30.1.2,d.142.1.1 31716,41484 2a6nA 292 83.17 c.1.10.1 126289 2o3aA 178 83.93 2a6lA 292 84.00 c.1.10.1 126285 1tuoA 464 85.00 3brqA 296 85.08 2vguA 407 85.23 1xvxA 312 85.88 c.94.1.1 116097 2viaA 405 87.04 1o1xA 155 89.01 c.121.1.1 86553 1pswA 348 89.49 c.87.1.7 88287 2z1mA 345 89.64