# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.54e-32 c.56.5.6 90921 1xovA 326 2.07e-28 b.34.11.4,c.56.5.6 122206,122207 2h0aA 276 0.2853 3bijA 285 0.4929 2dpiA 420 1.142 d.240.1.1,e.8.1.7 131612,131613 1ujnA 348 1.342 e.22.1.1 99460 1cg2A 393 2.393 c.56.5.4,d.58.19.1 33844,39360 1iowA 306 2.715 c.30.1.2,d.142.1.1 31713,41481 1gsa 316 3.322 2i87A 364 4.567 1vgyA 393 4.610 c.56.5.4,d.58.19.1 100620,100621 1nnfA 309 5.080 c.94.1.1 85903 1mldA 314 5.097 c.2.1.5,d.162.1.1 30122,42089 2odtX 328 5.221 2rb7A 364 5.321 1dnpA 471 5.376 a.99.1.1,c.28.1.1 18775,31630 1jq5A 370 5.882 e.22.1.2 67084 2ef5A 290 6.670 1yloA 348 6.796 b.49.3.1,c.56.5.4 123659,123660 1dv1A 449 9.278 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1byiA 224 9.427 c.37.1.10 32199 1eg5A 384 10.32 c.67.1.3 34429 1e4eA 343 10.88 c.30.1.2,d.142.1.1 59221,59222 1g67A 225 13.36 c.1.3.1 60311 1uhvA 500 13.53 b.71.1.2,c.1.8.3 99402,99403 1dv2A 452 13.82 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 3ce9A 354 13.86 1byi 224 15.02 1vljA 407 16.35 e.22.1.2 108832 2bjvA 265 16.97 1gq6A 313 17.22 c.42.1.1 70341 2q7dA 346 17.26 3cpxA 321 17.53 2alzA 390 17.58 d.240.1.1,e.8.1.7 126994,126995 1fnoA 417 18.54 d.58.19.1,c.56.5.4 70145,75841 1vhoA 346 18.89 b.49.3.1,c.56.5.4 100694,100695 1k0wA 231 19.23 c.74.1.1 77220 2f4qA 346 20.88 1jx4A 352 21.49 d.240.1.1,e.8.1.7 90378,90379 1iow 306 22.14 2jejA 358 22.20 d.240.1.1,e.8.1.7 138284,138285 1ccwA 137 23.19 c.23.6.1 31238 1rrmA 386 24.93 e.22.1.2 105081 2fuvA 549 25.25 1ytvA 366 25.62 c.94.1.1 124016 1yqeA 282 26.22 c.56.7.1 123879 2booA 247 27.10 2yxbA 161 27.56 2hxmA 223 29.01 c.18.1.1 136857 1gsaA 316 29.12 c.30.1.3,d.142.1.1 31718,41477 2yrrA 353 29.59 4eugA 229 29.80 c.18.1.1 31019 2dr1A 386 30.11 2rghA 571 30.61 1tca 317 31.73 1o5kA 306 31.78 c.1.10.1 92504 1ad2A 228 33.03 e.24.1.1 43353 1g3qA 237 33.42 c.37.1.10 60237 1xjcA 169 33.48 c.37.1.10 115387 3ct9A 356 33.58 1anf 370 34.33 2q43A 418 34.49 c.56.5.4,d.58.19.1 139821,139822 2j0aA 280 35.04 2pe3A 354 35.51 2qyvA 487 36.08 1ra0A 430 36.37 b.92.1.2,c.1.9.5 111756,111757 2nuwA 288 37.49 2rfgA 297 38.27 2f1kA 279 38.40 a.100.1.12,c.2.1.6 132772,132773 1dhpA 292 38.71 c.1.10.1 29097 2irpA 208 39.24 1kq3A 376 39.46 e.22.1.2 68790 2yutA 207 39.71 1np6A 174 40.14 c.37.1.10 85954 1ukz 203 40.51 2z7bA 270 40.62 1ta9A 450 40.79 3c3kA 285 40.86 2r78A 117 41.14 1omp 370 41.69 1hlgA 371 41.78 c.69.1.6 34656 1y0yA 353 43.12 b.49.3.1,c.56.5.4 122514,122515 1hdoA 206 44.28 c.2.1.2 60965 2cukA 311 44.58 1p5dX 463 45.90 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1tfuA 157 48.88 c.26.1.3 106859 1hyhA 309 48.96 c.2.1.5,d.162.1.1 30150,42117 1fpzA 212 49.21 c.45.1.1 59976 1xc1A 309 49.26 c.94.1.1 109543 1c0pA 363 49.36 c.4.1.2,d.16.1.3 30647,37934 1muwA 386 50.11 c.1.15.3 79495 2r91A 286 50.38 1vheA 373 50.73 b.49.3.1,c.56.5.4 100669,100670 2ehhA 294 51.50 1q35A 320 51.53 c.94.1.1 95661 1z2iA 358 52.28 1kjnA 157 52.32 c.115.1.1 72614 2j07A 420 52.51 a.99.1.1,c.28.1.1 137891,137892 1wqaA 455 53.32 2qh8A 302 53.44 1cs1A 386 53.70 c.67.1.3 34399 2fiuA 99 54.25 d.58.4.16 133537 1xvxA 312 54.60 c.94.1.1 116097 2fssA 365 54.88 1tuoA 464 55.10 1o1xA 155 55.17 c.121.1.1 86553 1k2yX 463 55.46 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1ycdA 243 55.95 1o7tA 309 56.51 c.94.1.1 86645 1x31B 404 57.58 1o2dA 371 57.91 e.22.1.2 86591 2acaA 189 58.02 d.63.1.2 126545 2ojpA 292 58.05 3cetA 334 58.24 1ehiA 377 58.35 c.30.1.2,d.142.1.1 31716,41484 3ceuA 210 58.43 1uc8A 280 58.69 c.30.1.6,d.142.1.7 99165,99166 2a1rA 430 58.91 1y44A 320 59.12 d.157.1.7 122608 2fvgA 340 60.32 b.49.3.1,c.56.5.4 134201,134202 1e7lA 157 60.39 a.140.4.1,d.4.1.5 64728,64729 1ja1A 622 62.27 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2eenA 183 63.99 1xfoA 357 64.38 b.49.3.1,c.56.5.4 115265,115266 2eayA 233 64.42 3brqA 296 64.51 1xkyA 301 64.63 c.1.10.1 122094 1uslA 170 67.28 c.121.1.1 99871 2o4cA 380 67.39 1laxA 370 68.23 c.94.1.1 84576 1oj4A 283 68.33 d.14.1.5,d.58.26.5 93083,93084 1amfA 233 69.52 c.94.1.1 35833 8abp 306 69.62 2qt3A 403 69.72 1hl2A 297 70.82 c.1.10.1 83581 2bv9A 290 71.00 c.1.8.3 129242 2a6nA 292 71.02 c.1.10.1 126289 3xis 387 71.03 2a6lA 292 71.65 c.1.10.1 126285 2ek8A 421 72.32 2pcqA 283 72.34 1lssA 140 73.38 c.2.1.9 74246 1v9nA 360 74.80 2f7lA 455 76.17 1nal1 297 78.05 1y4tA 322 78.14 c.94.1.1 116464 5reqA 727 79.27 c.1.19.1,c.23.6.1 29632,31259 4xis 387 79.47 1mrzA 293 80.27 b.43.5.1,c.26.1.3 91452,91453 3b4uA 294 80.43 2e7jA 371 80.65 1lehA 364 80.73 c.2.1.7,c.58.1.1 30268,33916 1ye8A 178 82.80 c.37.1.11 123010 1sbpA 310 83.17 c.94.1.1 35760 1ad4A 266 83.44 c.1.21.1 29670 1el5A 389 83.99 c.3.1.2,d.16.1.3 30369,37937 1oroA 213 84.41 c.61.1.1 34093 4mbp 370 84.86 2hneA 436 84.95 2gh9A 386 86.20 2a0mA 316 86.46 c.42.1.1 125960 2j44A 217 86.68 2jmpA 107 86.74 1nb9A 147 86.79 b.43.5.1 85515 1f74A 293 87.54 c.1.10.1 29079 1wcwA 261 88.32 2ayyA 121 89.67 c.23.1.6 127576