# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 4.56e-26 c.56.5.6 90921 1xovA 326 4.23e-22 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.1521 2rb7A 364 1.641 1yloA 348 1.663 b.49.3.1,c.56.5.4 123659,123660 1hi9A 274 2.894 c.99.1.1 61063 3cpxA 321 3.425 1fnoA 417 4.122 d.58.19.1,c.56.5.4 70145,75841 1qq9A 284 5.360 c.56.5.4 33841 2pe3A 354 5.469 2h0aA 276 5.618 1xjo 284 6.069 1y0yA 353 6.377 b.49.3.1,c.56.5.4 122514,122515 1cg2A 393 6.425 c.56.5.4,d.58.19.1 33844,39360 1xfoA 357 6.873 b.49.3.1,c.56.5.4 115265,115266 2q43A 418 7.187 c.56.5.4,d.58.19.1 139821,139822 1tkjA 284 7.861 c.56.5.4 119296 2fvgA 340 10.96 b.49.3.1,c.56.5.4 134201,134202 1dv1A 449 11.41 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2q4zA 312 12.12 2booA 247 12.13 1ccwA 137 12.34 c.23.6.1 31238 2qs9A 194 12.69 4eugA 229 13.06 c.18.1.1 31019 1o1xA 155 13.56 c.121.1.1 86553 1vgyA 393 13.87 c.56.5.4,d.58.19.1 100620,100621 2dpiA 420 14.34 d.240.1.1,e.8.1.7 131612,131613 1rrmA 386 14.82 e.22.1.2 105081 1f0kA 364 15.34 c.87.1.2 35465 2ef5A 290 15.61 1o2dA 371 15.61 e.22.1.2 86591 3bk2A 562 15.79 1uslA 170 16.45 c.121.1.1 99871 1vljA 407 17.99 e.22.1.2 108832 1vhoA 346 18.29 b.49.3.1,c.56.5.4 100694,100695 1yqeA 282 19.17 c.56.7.1 123879 2yutA 207 19.48 1yzfA 195 20.40 c.23.10.5 124275 1m33A 258 21.61 c.69.1.26 78514 3cu2A 237 21.98 3c3kA 285 22.65 1eg5A 384 23.65 c.67.1.3 34429 1zwxA 301 24.19 d.151.1.3 125752 1gsa 316 24.50 1amp 291 25.05 1xklA 273 25.42 c.69.1.20 115410 1atgA 231 25.46 c.94.1.1 35834 1iowA 306 25.66 c.30.1.2,d.142.1.1 31713,41481 1d4oA 184 25.83 c.31.1.4 31748 1m6yA 301 26.29 a.60.13.1,c.66.1.23 78716,78717 1vmeA 410 26.39 c.23.5.1,d.157.1.3 108893,108894 1pnoA 180 28.15 c.31.1.4 94953 2yvqA 143 28.88 2yrrA 353 29.59 3brqA 296 30.43 1amfA 233 32.07 c.94.1.1 35833 1ycdA 243 32.52 2fssA 365 32.67 2odtX 328 33.74 1jjtA 228 34.31 d.157.1.1 63139 1uxoA 192 34.34 c.69.1.31 108121 2rgyA 290 34.61 1hdoA 206 34.67 c.2.1.2 60965 1zkpA 268 35.61 d.157.1.9 125205 1e4eA 343 36.80 c.30.1.2,d.142.1.1 59221,59222 2z67A 456 37.08 2nvaA 372 38.29 2hxwA 237 38.57 1qz9A 416 39.14 c.67.1.3 96621 1rtqA 299 39.89 c.56.5.4 97819 1ra0A 430 40.42 b.92.1.2,c.1.9.5 111756,111757 2eklA 313 40.63 2gmnA 274 41.24 3b2yA 275 41.60 1ytvA 366 41.71 c.94.1.1 124016 3cc1A 433 42.61 1lokA 291 42.72 c.56.5.4 78122 2gu2A 312 43.39 1kjnA 157 44.95 c.115.1.1 72614 2qdsA 227 45.23 1yasA 257 45.85 c.69.1.20 34801 1r3dA 264 46.14 c.69.1.35 111680 1id1A 153 46.86 c.2.1.9 62286 1dqzA 280 48.36 c.69.1.3 34638 1xgkA 352 48.39 c.2.1.2 115286 2z1mA 345 49.05 3ct9A 356 49.14 1rpnA 335 50.15 c.2.1.2 97708 2h5yA 254 50.84 2e7jA 371 51.30 1yw4A 341 51.73 c.56.5.7 124131 1iow 306 52.30 1k20A 310 54.11 c.107.1.1 68027 1lehA 364 54.40 c.2.1.7,c.58.1.1 30268,33916 1k7kA 221 54.49 c.51.4.1 72104 1qycA 308 54.91 c.2.1.2 96581 1ivnA 190 54.91 c.23.10.5 83719 1jmkC 230 55.85 c.69.1.22 71747 1ehiA 377 56.31 c.30.1.2,d.142.1.1 31716,41484 1nmsA 249 56.61 c.17.1.1 85879 1anf 370 56.73 1ujnA 348 56.97 e.22.1.1 99460 1t3iA 420 57.31 c.67.1.3 106354 2fvkA 559 57.37 b.92.1.3,c.1.9.6 134204,134205 2j6iA 364 58.55 1k6xA 352 59.17 c.2.1.2 68238 1hkkA 364 59.20 c.1.8.5,d.26.3.1 90634,90635 2ar9A 278 59.58 2oztA 332 60.67 1a7tA 232 61.36 d.157.1.1 42041 1ako 268 61.93 2qj8A 332 62.13 1smlA 269 62.49 d.157.1.1 42053 1qp8A 303 63.74 c.2.1.4,c.23.12.1 30092,31352 1omp 370 64.29 2yvdA 431 64.50 1bn7A 294 64.89 c.69.1.8 34677 2pzmA 330 65.68 2aebA 322 65.69 c.42.1.1 126617 1qj4A 257 65.81 c.69.1.20 34796 1b1cA 181 66.04 c.23.5.2 31212 3bzwA 274 66.23 1e20A 209 67.68 c.34.1.1 31759 2q0sA 216 67.97 2bcoA 350 68.40 c.56.5.7 128302 2j44A 217 68.49 1atg 231 68.60 3bxpA 277 69.25 1tuoA 464 69.34 1wod 233 69.35 2q4vA 170 69.95 d.108.1.1 139878 1jf9A 408 70.06 c.67.1.3 62931 1mvlA 209 73.41 c.34.1.1 85146 2gzmA 267 73.60 1auk 489 73.61 2o20A 332 75.14 2i3dA 249 75.48 2a8yA 270 75.89 1ko3A 230 75.99 d.157.1.1 90974 1dnpA 471 76.10 a.99.1.1,c.28.1.1 18775,31630 2cukA 311 77.77 1vhnA 318 77.97 c.1.4.1 100693 1amf 233 78.01 1zoyA 622 78.41 1pswA 348 79.17 c.87.1.7 88287 1e9lA 377 79.92 c.1.8.5,d.26.3.1 59395,59396 1aj2A 282 81.10 c.1.21.1 29665 1qk8A 146 81.20 c.47.1.10 33061 2dwuA 276 82.67 1z2lA 423 84.61 c.56.5.4,d.58.19.1 124383,124384 2alzA 390 84.70 d.240.1.1,e.8.1.7 126994,126995 1auoA 218 84.82 c.69.1.14 34716 1aj2 282 84.96 2ax4A 198 86.37 1flcA 432 87.48 b.19.1.3,c.23.10.2 23837,31337 2afwA 329 87.73 c.56.5.8 126707