# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 1.25e-28 c.56.5.6 90921 1xovA 326 7.77e-25 b.34.11.4,c.56.5.6 122206,122207 3bijA 285 0.01672 1vljA 407 2.858 e.22.1.2 108832 1ccwA 137 3.215 c.23.6.1 31238 2q4zA 312 4.089 2gu2A 312 4.766 1gsa 316 5.413 1tca 317 5.863 1k20A 310 7.213 c.107.1.1 68027 2qs9A 194 8.380 1oj7A 408 9.065 e.22.1.2 103971 2h0aA 276 10.49 1rrmA 386 11.17 e.22.1.2 105081 1ujnA 348 12.06 e.22.1.1 99460 2ehhA 294 13.73 2v9dA 343 15.65 2odtX 328 15.76 2rghA 571 16.81 2rfgA 297 16.94 2fvkA 559 17.17 b.92.1.3,c.1.9.6 134204,134205 1yasA 257 18.93 c.69.1.20 34801 1hi9A 274 19.32 c.99.1.1 61063 1o2dA 371 19.68 e.22.1.2 86591 2an1A 292 19.85 1m33A 258 21.09 c.69.1.26 78514 1qq9A 284 22.05 c.56.5.4 33841 1xklA 273 23.75 c.69.1.20 115410 1ra0A 430 24.96 b.92.1.2,c.1.9.5 111756,111757 1yloA 348 24.97 b.49.3.1,c.56.5.4 123659,123660 3cdxA 354 25.15 2hxwA 237 27.11 2z67A 456 27.37 1pswA 348 27.71 c.87.1.7 88287 2ar9A 278 27.97 2fssA 365 28.71 1ehiA 377 28.73 c.30.1.2,d.142.1.1 31716,41484 2hxmA 223 28.99 c.18.1.1 136857 2o3aA 178 29.40 1fnoA 417 29.99 d.58.19.1,c.56.5.4 70145,75841 1hl2A 297 30.31 c.1.10.1 83581 1d4oA 184 30.45 c.31.1.4 31748 1xfoA 357 31.05 b.49.3.1,c.56.5.4 115265,115266 2nuwA 288 32.72 3ce9A 354 32.92 1uk8A 282 33.73 c.69.1.10 107907 1iowA 306 34.12 c.30.1.2,d.142.1.1 31713,41481 1e4eA 343 34.82 c.30.1.2,d.142.1.1 59221,59222 1y0yA 353 34.84 b.49.3.1,c.56.5.4 122514,122515 2pe3A 354 34.88 2rb7A 364 36.56 1tkjA 284 37.43 c.56.5.4 119296 1atgA 231 38.18 c.94.1.1 35834 2r91A 286 38.21 1pnoA 180 39.17 c.31.1.4 94953 2j6iA 364 40.26 1jq5A 370 40.39 e.22.1.2 67084 2oztA 332 40.44 1g38A 393 41.05 c.66.1.27,d.287.1.1 111567,111568 2yrrA 353 41.64 3c24A 286 42.10 2q7dA 346 42.66 1nal1 297 43.24 2ojpA 292 43.42 1qz9A 416 43.93 c.67.1.3 96621 3cniA 156 44.35 1o1xA 155 45.09 c.121.1.1 86553 2booA 247 45.59 1uxoA 192 46.15 c.69.1.31 108121 2f1kA 279 46.35 a.100.1.12,c.2.1.6 132772,132773 1amfA 233 46.83 c.94.1.1 35833 2dpiA 420 47.09 d.240.1.1,e.8.1.7 131612,131613 4eugA 229 47.38 c.18.1.1 31019 1dv1A 449 48.03 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2hjpA 290 48.09 1u2eA 289 49.17 1sbpA 310 49.21 c.94.1.1 35760 1amf 233 49.54 1qk8A 146 50.00 c.47.1.10 33061 2gzmA 267 52.51 1qj4A 257 52.65 c.69.1.20 34796 1xjo 284 52.80 2i3dA 249 53.81 1xkyA 301 54.26 c.1.10.1 122094 2pcqA 283 54.75 2p4qA 497 55.62 1brt 277 55.82 1hs6A 611 56.30 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1lehA 364 56.36 c.2.1.7,c.58.1.1 30268,33916 2qh8A 302 56.59 1o5kA 306 57.66 c.1.10.1 92504 1u3dA 509 59.20 a.99.1.1,c.28.1.1 107638,107639 2cukA 311 59.80 1b1cA 181 59.96 c.23.5.2 31212 1ii7A 333 61.60 d.159.1.4 62415 2fvgA 340 61.62 b.49.3.1,c.56.5.4 134201,134202 1drw 273 61.72 1fxoA 293 62.60 c.68.1.6 34524 1nc7A 138 62.65 b.123.1.1 85549 1kjnA 157 63.11 c.115.1.1 72614 1n08A 163 63.68 b.43.5.1 79730 2bcoA 350 64.20 c.56.5.7 128302 2z06A 252 64.59 2o4cA 380 64.82 1uhvA 500 64.90 b.71.1.2,c.1.8.3 99402,99403 1atg 231 65.67 1lokA 291 66.15 c.56.5.4 78122 1anf 370 66.20 2j73A 103 66.33 1p49A 562 67.66 c.76.1.2 94089 1wod 233 67.87 1omp 370 68.29 3brqA 296 68.99 2fqxA 318 69.07 2q4vA 170 69.62 d.108.1.1 139878 3cpxA 321 71.56 1w3iA 293 72.21 c.1.10.1 109152 1broA 277 72.43 c.69.1.12 34700 1k0wA 231 72.78 c.74.1.1 77220 2i87A 364 72.90 2p97A 201 74.77 2bs3A 656 74.98 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 3cu2A 237 76.09 1ycdA 243 76.16 2q0oA 236 76.69 1j6pA 418 76.70 b.92.1.4,c.1.9.9 77089,77090 1yqeA 282 77.06 c.56.7.1 123879 1zwxA 301 77.30 d.151.1.3 125752 2a6lA 292 77.63 c.1.10.1 126285 1amp 291 78.41 1va4A 279 79.26 c.69.1.12 108458 1yw4A 341 79.67 c.56.5.7 124131 3ceuA 210 80.76 2gtqA 867 82.05 2bv9A 290 82.29 c.1.8.3 129242 2qt3A 403 82.41 1dhpA 292 82.46 c.1.10.1 29097 2z1mA 345 82.60 2q8nA 460 82.73 2grrA 161 83.18 2biiA 424 83.19 2jejA 358 84.18 d.240.1.1,e.8.1.7 138284,138285 2q8uA 336 84.22 1p3wA 404 85.25 c.67.1.3 87752 2gk4A 232 85.59 2a6nA 292 85.87 c.1.10.1 126289 1ta9A 450 85.94 1i7nA 309 86.28 c.30.1.5,d.142.1.3 83681,83682 1udhA 244 87.58 c.18.1.1 31015 1zoiA 276 88.44 1aj2A 282 88.53 c.1.21.1 29665 1nx8A 273 89.08 b.82.2.8 86374 1wcwA 261 89.10 2qj8A 332 89.35 2qdsA 227 89.46