# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jwqA 179 2.22e-12 c.56.5.6 90921 1xovA 326 9.50e-11 b.34.11.4,c.56.5.6 122206,122207 2odtX 328 4.395 2d59A 144 6.559 c.2.1.8 131266 2qs9A 194 6.794 2o4cA 380 7.989 1uxoA 192 8.668 c.69.1.31 108121 1hdoA 206 10.71 c.2.1.2 60965 1ccwA 137 10.81 c.23.6.1 31238 1d4aA 273 12.45 c.23.5.3 31219 1tca 317 13.80 1iugA 352 13.93 c.67.1.3 90699 2p6wA 213 14.68 1sbpA 310 14.92 c.94.1.1 35760 1qbgA 272 16.36 c.23.5.3 31227 2c81A 418 17.72 1yqeA 282 18.00 c.56.7.1 123879 2cukA 311 18.21 1y80A 210 18.27 2i0fA 157 20.63 1qydA 313 20.69 c.2.1.2 96583 1vljA 407 21.35 e.22.1.2 108832 2d0oB 125 22.18 c.51.3.2 131078 1yw4A 341 22.74 c.56.5.7 124131 1p5dX 463 22.85 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1qdlB 195 23.44 c.23.16.1 31437 1iowA 306 24.12 c.30.1.2,d.142.1.1 31713,41481 1sg0A 230 25.10 c.23.5.3 118955 1yzfA 195 26.62 c.23.10.5 124275 2f62A 161 26.89 c.23.14.1 133021 2hrcA 359 28.54 c.92.1.1 136687 2q7dA 346 30.05 2i8lA 156 30.81 1hrkA 359 31.29 c.92.1.1 61228 1lsuA 147 32.22 c.2.1.9 74250 1wl8A 189 37.10 c.23.16.1 120997 1wpnA 188 37.20 c.107.1.1 114826 1wyuA 438 37.26 c.67.1.7 121452 2ac4A 309 37.56 1jq5A 370 37.94 e.22.1.2 67084 2ac2A 309 37.95 1ta9A 450 38.34 1sbzA 197 39.00 c.34.1.1 112068 2j07A 420 39.86 a.99.1.1,c.28.1.1 137891,137892 1a88A 275 40.48 c.69.1.12 34707 1rrmA 386 40.81 e.22.1.2 105081 1vicA 262 42.57 c.68.1.13 100756 1budA 197 42.63 d.92.1.9 40328 1r55A 214 43.12 d.92.1.9 111694 1eexB 224 43.36 c.51.3.1 33213 1k2yX 463 43.45 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1nmsA 249 43.69 c.17.1.1 85879 1gdhA 320 44.31 c.2.1.4,c.23.12.1 30095,31355 1w4xA 542 44.64 c.3.1.5,c.3.1.5 109171,109172 2f1rA 171 45.32 3bijA 285 46.67 1dbwA 126 46.87 c.23.1.1 31095 1twyA 290 47.40 c.94.1.1 112767 1dxy 333 47.47 1zx1A 231 47.82 c.23.5.3 125760 1dxyA 333 48.38 c.2.1.4,c.23.12.1 30094,31354 1qp8A 303 49.03 c.2.1.4,c.23.12.1 30092,31352 2yxbA 161 49.12 2yrrA 353 49.24 2gu2A 312 49.39 2a5lA 200 49.48 c.23.5.8 126176 2ef5A 290 50.19 2bzsA 236 51.64 c.23.5.3 129560 1x0lA 333 52.95 2j4dA 525 52.99 2qwxA 231 53.38 1xs5A 241 54.72 c.94.1.1 115912 1q0rA 298 54.76 c.69.1.28 95508 1i7qB 193 55.03 c.23.16.1 61902 1bykA 255 55.58 c.93.1.1 35706 1o2dA 371 56.25 e.22.1.2 86591 1np7A 489 56.42 a.99.1.1,c.28.1.1 80677,80678 1y5eA 169 56.87 c.57.1.1 122632 1iow 306 57.03 2bkwA 385 58.13 c.67.1.3 128714 2pjkA 178 58.24 2hufA 393 59.35 1i1qB 192 59.39 c.23.16.1 61544 1nbwB 117 59.60 c.51.3.2 80396 2gmsA 390 59.66 2h1vA 310 59.77 3b2yA 275 60.39 2qvcA 313 61.85 2amjA 204 63.12 1di0A 158 63.50 c.16.1.1 30957 2ejbA 189 64.37 2h78A 302 64.82 1jr2A 286 66.18 c.113.1.1 67111 1e4eA 343 66.97 c.30.1.2,d.142.1.1 59221,59222 2hmvA 144 67.02 c.2.1.9 136615 1xmpA 170 67.08 c.23.8.1 115521 1drwA 273 67.66 c.2.1.3,d.81.1.3 30057,39972 1tezA 474 67.70 a.99.1.1,c.28.1.1 112409,112410 1kgsA 225 67.72 a.4.6.1,c.23.1.1 68596,68597 1l7dA 384 67.79 c.2.1.4,c.23.12.2 77774,77775 2pbqA 178 67.98 1y81A 138 68.14 c.2.1.8 122731 1va4A 279 68.65 c.69.1.12 108458 2a35A 215 69.08 c.2.1.2 126072 2h88A 621 69.08 1mkzA 172 70.46 c.57.1.1 84998 1y8qA 346 71.35 1u3dA 509 71.58 a.99.1.1,c.28.1.1 107638,107639 2q0sA 216 72.26 1cjcA 460 72.32 c.3.1.1,c.4.1.1 30319,30604 1yroB 286 72.53 c.68.1.2 123932 2ar9A 278 72.55 1kmkA 406 72.87 c.67.1.3 68696 2gcgA 330 74.13 1vffA 423 74.16 c.1.8.4 120033 1gsaA 316 74.45 c.30.1.3,d.142.1.1 31718,41477 2r48A 106 74.47 1mp4A 292 75.47 c.68.1.6 79376 2q4zA 312 75.54 2egxA 269 76.30 1xvxA 312 77.68 c.94.1.1 116097 1sqsA 242 77.81 c.23.5.5 98968 1tcaA 317 77.96 c.69.1.17 34726 2c5aA 379 78.59 c.2.1.2 129894 1i6aA 219 79.39 c.94.1.1 61827 1qnaA 200 79.97 d.129.1.1,d.129.1.1 41226,41227 2is8A 164 80.58 2dbqA 334 81.47 2driA 271 82.86 c.93.1.1 35637 3brkX 420 82.98 2f7lA 455 83.30 1t13A 158 86.05 1dnpA 471 86.75 a.99.1.1,c.28.1.1 18775,31630 1h7eA 245 87.25 c.68.1.13 60717 1yp1A 202 87.26 3b8xA 390 87.51 1gpmA 525 87.60 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vjoA 393 87.77 c.67.1.3 100827 2plnA 137 88.03 1u9cA 224 88.59 c.23.16.2 113234 1ys7A 233 88.73 a.4.6.1,c.23.1.1 123961,123962 2obxA 157 88.85 1m32A 366 89.17 c.67.1.3 78508