# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	8.12e-19		
1x25A	128	1.24e-16	d.79.1.1	121619
1oniA	137	1.69e-16	d.79.1.1	87144
1qahA	136	2.26e-16	d.79.1.1	96338
2b33A	140	2.72e-16	d.79.1.1	127765
1jd1A	129	2.87e-16	d.79.1.1	62890
2cvlA	124	4.09e-16	d.79.1.1	130871
1qd9A	124	6.23e-16	d.79.1.1	39758
2uykA	129	1.26e-15		
1qu9A	128	2.44e-15	d.79.1.1	39755
2ewcA	126	4.43e-14	d.79.1.1	132454
1pf5A	131	5.24e-14	d.79.1.1	94604
2ig8A	144	2.01e-12		
1dbfA	127	9.551	d.79.1.2	39761
2a2lA	145	16.46	d.110.9.1	126035
1eejA	216	19.80	c.47.1.9,d.17.3.1	33057,38071
1t3bA	211	25.40	c.47.1.9,d.17.3.1	106341,106342
1bupA	386	28.71	c.55.1.1,c.55.1.1	33377,33378
1kay	381	48.57		
2ezkA	99	49.38	a.4.1.2	16027
2i6cA	160	54.84	d.108.1.1	137095
2ra2A	64	55.30		
1ba1	386	56.80		
2jn0A	61	59.25		
1w97L	246	60.47	c.55.1.11,c.55.1.11	114406,114407
1ithA	141	63.32	a.1.1.2	15623
1iyoA	262	66.90	e.3.1.1	76970
3bduA	62	68.39		
2rb6A	61	68.52		
2qf4A	172	73.39		
2qcuA	501	78.89		
2bm0A	691	80.43	b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1	128748,128749,128750,128751,128752
1zh1A	163	81.36		
2ewsA	287	84.20		
2d4wA	504	85.52		
2a31A	223	87.08	b.47.1.2	126068
1c0pA	363	88.17	c.4.1.2,d.16.1.3	30647,37934