# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.49e-21		
1x25A	128	2.86e-18	d.79.1.1	121619
1oniA	137	2.88e-18	d.79.1.1	87144
1qahA	136	6.13e-18	d.79.1.1	96338
1jd1A	129	9.71e-18	d.79.1.1	62890
2cvlA	124	1.16e-17	d.79.1.1	130871
2b33A	140	1.17e-17	d.79.1.1	127765
1qd9A	124	1.64e-17	d.79.1.1	39758
2uykA	129	3.19e-17		
1qu9A	128	5.66e-17	d.79.1.1	39755
1pf5A	131	4.46e-15	d.79.1.1	94604
2ewcA	126	5.34e-15	d.79.1.1	132454
2ig8A	144	3.00e-13		
1eejA	216	6.778	c.47.1.9,d.17.3.1	33057,38071
2a2lA	145	6.814	d.110.9.1	126035
1dbfA	127	9.406	d.79.1.2	39761
1bupA	386	11.86	c.55.1.1,c.55.1.1	33377,33378
1t3bA	211	16.46	c.47.1.9,d.17.3.1	106341,106342
1kay	381	19.17		
1zl0A	311	21.67	c.8.10.1,c.23.16.7	125231,125232
2i6cA	160	27.76	d.108.1.1	137095
2o5aA	125	29.66		
1dkgD	383	32.63	c.55.1.1,c.55.1.1	33427,33428
1ba1	386	34.17		
2aunA	317	35.82	c.8.10.1,c.23.16.7	127334,127335
1ndh	272	37.90		
2ra2A	64	40.37		
1u0mA	382	41.09	c.95.1.2,c.95.1.2	107557,107558
1c0pA	363	42.22	c.4.1.2,d.16.1.3	30647,37934
1zh1A	163	44.17		
2qxlA	658	44.25		
3bduA	62	44.39		
1zrsA	317	46.73	c.8.10.1,c.23.16.7	125556,125557
2qf4A	172	47.04		
2bh9A	489	59.15		
1x5vA	34	60.69		
1c76A	136	61.79	d.15.5.1	37718
2bsaA	303	64.87	b.43.4.2,c.25.1.1	129078,129079
1h72C	296	65.70	d.14.1.5,d.58.26.1	60712,60713
1w34A	304	66.79	b.43.4.2,c.25.1.1	120620,120621
1zowA	313	67.43		
2aqwA	332	67.58	c.1.2.3	127184
1u6eA	335	74.74	c.95.1.2,c.95.1.2	119568,119569
2a31A	223	77.01	b.47.1.2	126068
2ezkA	99	77.45	a.4.1.2	16027
1npmA	225	79.72	b.47.1.2	26070
2jn0A	61	85.31		
1rh9A	373	87.56	c.1.8.3	118773