# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.59e-17		
1oniA	137	3.87e-15	d.79.1.1	87144
1x25A	128	4.07e-15	d.79.1.1	121619
1qahA	136	5.40e-15	d.79.1.1	96338
1jd1A	129	6.97e-15	d.79.1.1	62890
2b33A	140	7.70e-15	d.79.1.1	127765
2cvlA	124	1.03e-14	d.79.1.1	130871
1qd9A	124	1.49e-14	d.79.1.1	39758
2uykA	129	2.48e-14		
1qu9A	128	3.88e-14	d.79.1.1	39755
2ewcA	126	4.99e-13	d.79.1.1	132454
1pf5A	131	1.35e-12	d.79.1.1	94604
2ig8A	144	1.71e-11		
1dbfA	127	8.217	d.79.1.2	39761
2i6cA	160	21.14	d.108.1.1	137095
2a2lA	145	26.12	d.110.9.1	126035
1eejA	216	30.46	c.47.1.9,d.17.3.1	33057,38071
1ithA	141	31.63	a.1.1.2	15623
1iyoA	262	33.32	e.3.1.1	76970
1fj2A	232	34.31	c.69.1.14	34720
1t3bA	211	35.29	c.47.1.9,d.17.3.1	106341,106342
2qcuA	501	42.08		
1zynA	202	53.63	c.47.1.2,c.47.1.2	125838,125839
1auoA	218	59.34	c.69.1.14	34716
1bupA	386	61.86	c.55.1.1,c.55.1.1	33377,33378
2d4wA	504	63.27		
2ge3A	170	70.97	d.108.1.1	135044
2rb6A	61	77.97		
2dvmA	439	79.16		
2ra2A	64	81.88		
1w97L	246	83.00	c.55.1.11,c.55.1.11	114406,114407
1t0bA	252	86.52	c.23.16.6	106199
2i7pA	362	87.42		
1it2A	146	88.73	a.1.1.2	66365